RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 C6orf89Q6UWU4 347 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 METTL3Q86U44 580 aaKnown RBP13.44□□□□□ -0.26
HMGB1-202ENST00000339872 MFSD6LQ8IWD5 586 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 VN1R2Q8NFZ6 395 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 MYO19Q96H55 970 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 TSSK1BQ9BXA7 367 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 TLK1Q9UKI8 766 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 CCDC162PA2VCL2 907 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 C2orf81A6NN90 581 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 PIGNO95427 931 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 GLP2RO95838 553 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 IGSF6O95976 241 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 PROCP04070 461 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 GSTA1P08263 222 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 SRCP12931 536 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 TCF3P15923 654 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 ABL2P42684 1182 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 LEPRP48357 1165 aaKnown RBP13.44□□□□□ -0.26
HMGB1-202ENST00000339872 ZNF460Q14592 562 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 CHI3L2Q15782 390 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 CLEC14AQ86T13 490 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 CAMK1DQ8IU85 385 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 TRIM42Q8IWZ5 723 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 LMNTD2Q8IXW0 634 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 RYBPQ8N488 228 aaPredicted RBP13.44□□□□□ -0.26
HMGB1-202ENST00000339872 PAF1Q8N7H5 531 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 OR4K2Q8NGD2 314 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 E2F7Q96AV8 911 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 NDNQ99608 321 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 LMAN2LQ9H0V9 348 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 SFXN1Q9H9B4 322 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 NLE1Q9NVX2 485 aaPredicted RBP13.44□□□□□ -0.26
HMGB1-202ENST00000339872 SIRPGQ9P1W8 387 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 MSRAQ9UJ68 235 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 RIMKLBQ9ULI2 386 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 EPOPA6NHQ4 379 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 BIRC5O15392 142 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 KIAA0754O94854 1291 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 SLC35E2BP0CK96 405 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 PABPC1P11940 636 aaKnown RBP13.43□□□□□ -0.26
HMGB1-202ENST00000339872 STMN1P16949 149 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 GKP32189 559 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 CSRP3P50461 194 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 RAB10P61026 200 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 BCL2L1Q07817 233 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 SLC20A2Q08357 652 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 PTPRRQ15256 657 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 RBM20Q5T481 1227 aaKnown RBP13.43□□□□□ -0.26
HMGB1-202ENST00000339872 ARMC12Q5T9G4 340 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 CEP97Q8IW35 865 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 CELF5Q8N6W0 485 aaKnown RBP13.43□□□□□ -0.26
HMGB1-202ENST00000339872 OTUB2Q96DC9 234 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 CATSPERZQ9NTU4 200 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 SLC25A13Q9UJS0 675 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 ANKRD6Q9Y2G4 727 aa13.43□□□□□ -0.26
HMGB1-202ENST00000339872 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 SLC9A3R1O14745 358 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 KLF11O14901 512 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 CD3EAPO15446 510 aaKnown RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 FZD6O60353 706 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 ZNF821O75541 412 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 MAPK8P45983 427 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 POLD2P49005 469 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 SLC12A2P55011 1212 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 OVGP1Q12889 678 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 PCLAFQ15004 111 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 CCDC153Q494R4 210 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 FASTKD1Q53R41 847 aaKnown RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 DGKKQ5KSL6 1271 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 RNF187Q5TA31 235 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 ATG16L1Q676U5 607 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 MRNIPQ6NTE8 343 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 ADGRG2Q8IZP9 1017 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 NAT16Q8N8M0 369 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 OR4L1Q8NH43 312 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 CDKN2AIPNLQ96HQ2 116 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 TSNARE1Q96NA8 513 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 APOL5Q9BWW9 433 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 IGFLR1Q9H665 355 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 SLC28A3Q9HAS3 691 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 POLR3BQ9NW08 1133 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 HS3ST2Q9Y278 367 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 ARL2BPQ9Y2Y0 163 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 TRANK1O15050 2925 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 ANKRD65E5RJM6 399 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 BNIP3LO60238 219 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 PGLSO95336 258 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 S1PR4O95977 384 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 GSRP00390 522 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 CTPS1P17812 591 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 LPOP22079 712 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 KCNA4P22459 653 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 ALDH3A1P30838 453 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 GRIA4P48058 902 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 CLCN5P51795 746 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 TAS2R39P59534 338 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 POU4F1Q01851 419 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 BST1Q10588 318 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms