RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 CASP8Q14790 479 aa27.55■■■□□ 2
CTDNEP1-201ENST00000318988 TTC7BQ86TV6 843 aa27.55■■■□□ 2
CTDNEP1-201ENST00000318988 ZSWIM9Q86XI8 627 aa27.55■■■□□ 2
CTDNEP1-201ENST00000318988 OR2T3Q8NH03 318 aa27.55■■■□□ 2
CTDNEP1-201ENST00000318988 ZNF669Q96BR6 464 aaPredicted RBP27.55■■■□□ 2
CTDNEP1-201ENST00000318988 RSPH9Q9H1X1 276 aaPredicted RBP27.55■■■□□ 2
CTDNEP1-201ENST00000318988 LMAN1LQ9HAT1 526 aa27.55■■■□□ 2
CTDNEP1-201ENST00000318988 LTB4R2Q9NPC1 389 aa27.55■■■□□ 2
CTDNEP1-201ENST00000318988 TSPAN11A1L157 253 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 C16orf96A6NNT2 1141 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 ADAM23O75077 832 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 CHRNB1P11230 501 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 TARSP26639 723 aaKnown RBP27.54■■■□□ 2
CTDNEP1-201ENST00000318988 SSTR1P30872 391 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 PDE1BQ01064 536 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 SLC29A2Q14542 456 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 TAF1AQ15573 450 aaPredicted RBP27.54■■■□□ 2
CTDNEP1-201ENST00000318988 UGP2Q16851 508 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 SPANXN3Q5MJ09 141 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 ZNF776Q68DI1 518 aaPredicted RBP27.54■■■□□ 2
CTDNEP1-201ENST00000318988 UNC5AQ6ZN44 842 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 GPR63Q9BZJ6 419 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 SPO11Q9Y5K1 396 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 ANKRD36A6QL64 1941 aa27.54■■■□□ 2
CTDNEP1-201ENST00000318988 A0A087WUV0 522 aaPredicted RBP27.53■■■□□ 2
CTDNEP1-201ENST00000318988 CAPN8A6NHC0 703 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 FAM170BA6NMN3 283 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 UPK3BL1B0FP48 263 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 UPK3BL2E5RIL1 263 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 USP1O94782 785 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 ADH1BP00325 375 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 ALPIP09923 528 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 SATB1Q01826 763 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 MSLNQ13421 630 aaPredicted RBP27.53■■■□□ 2
CTDNEP1-201ENST00000318988 UAP1Q16222 522 aaPredicted RBP27.53■■■□□ 2
CTDNEP1-201ENST00000318988 FBXL19Q6PCT2 694 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 GSDMBQ8TAX9 411 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 SCRN2Q96FV2 425 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 MMP17Q9ULZ9 603 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 PPIL1Q9Y3C6 166 aa27.53■■■□□ 2
CTDNEP1-201ENST00000318988 CCDC78A2IDD5 438 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 SLC4A1P02730 911 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 ABHD2P08910 425 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 CYP2A6P11509 494 aaPredicted RBP27.52■■■□□ 2
CTDNEP1-201ENST00000318988 PAMP19021 973 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 STX2P32856 288 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 HNF1BP35680 557 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 GPX6P59796 221 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 FAM193AP78312 1265 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 CRYMQ14894 314 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 ANKRD20A4Q4UJ75 823 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 KIAA1211LQ6NV74 962 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 ERAP2Q6P179 960 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 CES3Q6UWW8 571 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 TMEM135Q86UB9 458 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 SERBP1Q8NC51 408 aaKnown RBP eCLIP27.52■■■□□ 2
CTDNEP1-201ENST00000318988 UHMK1Q8TAS1 419 aaKnown RBP27.52■■■□□ 2
CTDNEP1-201ENST00000318988 CCDC77Q9BR77 488 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 ZNF711Q9Y462 761 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 ARL5AQ9Y689 179 aa27.52■■■□□ 2
CTDNEP1-201ENST00000318988 TIMP2P16035 220 aa27.51■■■□□ 2
CTDNEP1-201ENST00000318988 CCDC15Q0P6D6 951 aa27.51■■■□□ 2
CTDNEP1-201ENST00000318988 CST6Q15828 149 aa27.51■■■□□ 2
CTDNEP1-201ENST00000318988 SKIDA1Q1XH10 827 aa27.51■■■□□ 2
CTDNEP1-201ENST00000318988 TSTD2Q5T7W7 516 aa27.51■■■□□ 2
CTDNEP1-201ENST00000318988 STEAP4Q687X5 459 aa27.51■■■□□ 2
CTDNEP1-201ENST00000318988 PARS2Q7L3T8 475 aaKnown RBP27.51■■■□□ 2
CTDNEP1-201ENST00000318988 SMIM14Q96QK8 99 aa27.51■■■□□ 2
CTDNEP1-201ENST00000318988 TRIM56Q9BRZ2 755 aaKnown RBP27.51■■■□□ 2
CTDNEP1-201ENST00000318988 TBC1D17Q9HA65 648 aa27.51■■■□□ 2
CTDNEP1-201ENST00000318988 COL6A3P12111 3177 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 TCF20Q9UGU0 1960 aaKnown RBP27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 C1orf232A0A0U1RR37 186 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 MROH6A6NGR9 719 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 ATG13O75143 517 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 PAPSS2O95340 614 aaPredicted RBP27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 LPOP22079 712 aaPredicted RBP27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 NMBRP28336 390 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 SUOXP51687 545 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 IFFO1Q0D2I5 559 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 MDGA1Q8NFP4 955 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 STYXQ8WUJ0 223 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 ARRDC3Q96B67 414 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 MFSD3Q96ES6 412 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 FOXQ1Q9C009 403 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 EPB41L4BQ9H329 900 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 FAM169AQ9Y6X4 670 aa27.51■■□□□ 1.99
CTDNEP1-201ENST00000318988 A0A1W2PQF6 199 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 LDB2O43679 373 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 C5AR1P21730 350 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 NEK3P51956 506 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 ERN2Q76MJ5 926 aaKnown RBP27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 CACUL1Q86Y37 369 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 FBF1Q8TES7 1133 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 PEX13Q92968 403 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 MCCC1Q96RQ3 725 aaPredicted RBP27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 LYSMD1Q96S90 227 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 RUFY1Q96T51 708 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 ZFYVE1Q9HBF4 777 aa27.5■■□□□ 1.99
CTDNEP1-201ENST00000318988 CD320Q9NPF0 282 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms