RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 SYT17Q9BSW7 474 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 MRPS26Q9BYN8 205 aaKnown RBP17.35■□□□□ 0.37
SHANK1-201ENST00000293441 BCL2L14Q9BZR8 327 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 MRPL39Q9NYK5 338 aaKnown RBP17.35■□□□□ 0.37
SHANK1-201ENST00000293441 STBD1O95210 358 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 CCNE2O96020 404 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 PEX6Q13608 980 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 NRF1Q16656 503 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 KCTD19Q17RG1 926 aaPredicted RBP17.35■□□□□ 0.37
SHANK1-201ENST00000293441 CRY2Q49AN0 593 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 BHLHB9Q6PI77 547 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 ANKS1BQ7Z6G8 1248 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 P2RY11Q96G91 374 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 AGO3Q9H9G7 860 aaKnown RBP17.35■□□□□ 0.37
SHANK1-201ENST00000293441 PCDH18Q9HCL0 1135 aa17.35■□□□□ 0.37
SHANK1-201ENST00000293441 NPEPPSL1A6NEC2 478 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 RNASEH2AO75792 299 aaKnown RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 PURAQ00577 322 aaKnown RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 RFWD3Q6PCD5 774 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 PIWIL2Q8TC59 973 aaKnown RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 PYDC1Q8WXC3 89 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 TRBV23OR9-2A0A075B6M9 112 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 DUSP11O75319 330 aaKnown RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 CLDN11O75508 207 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 CXCR3P49682 368 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 SPRYD7Q5W111 196 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 HEATR4Q86WZ0 1026 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 OR4A15Q8NGL6 344 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 MAML3Q96JK9 1138 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 CEP44Q9C0F1 390 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 E7ENQ6 273 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 PPIGQ13427 754 aaKnown RBP eCLIP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 RHBDF2Q6PJF5 856 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 TXNDC11Q6PKC3 985 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 EXOC3L1Q86VI1 746 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 PDZD7Q9H5P4 517 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 NDUFA13Q9P0J0 144 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 EVLQ9UI08 416 aaPredicted RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 NDRG2Q9UN36 371 aaKnown RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 EPHX1P07099 455 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 SPDYCQ5MJ68 293 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 CERCAMQ5T4B2 595 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 ADGRG2Q8IZP9 1017 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 EMID1Q96A84 441 aaPredicted RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 REXO5Q96IC2 774 aaKnown RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 SPATA5L1Q9BVQ7 753 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 EFCAB10A6NFE3 127 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 CENPXA8MT69 81 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 TSPAN1O60635 241 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 ZBTB48P10074 688 aaPredicted RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 IDH2P48735 452 aaKnown RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 ISLR2Q6UXK2 745 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 BBS12Q6ZW61 710 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 ARMC8Q8IUR7 673 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 PGM2Q96G03 612 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 HIC2Q96JB3 615 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 TCF25Q9BQ70 676 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 LRRC19Q9H756 370 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 SNX15Q9NRS6 342 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 TBC1D14Q9P2M4 693 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 MCM8Q9UJA3 840 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 MTF2Q9Y483 593 aaPredicted RBP17.34■□□□□ 0.37
SHANK1-201ENST00000293441 KCNE2Q9Y6J6 123 aa17.34■□□□□ 0.37
SHANK1-201ENST00000293441 ZBTB22O15209 634 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 BCL10O95999 233 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 HNRNPLP14866 589 aaKnown RBP eCLIP17.33■□□□□ 0.37
SHANK1-201ENST00000293441 GRIA3P42263 894 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 GRM3Q14832 879 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 INO80DQ53TQ3 878 aaPredicted RBP17.33■□□□□ 0.37
SHANK1-201ENST00000293441 ATAT1Q5SQI0 421 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 VSTM1Q6UX27 236 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 LINGO4Q6UY18 593 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 OR14C36Q8NHC7 312 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 BAP1Q92560 729 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 CD101Q93033 1021 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 TNKS2Q9H2K2 1166 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 CAB39LQ9H9S4 337 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 LEF1Q9UJU2 399 aaPredicted RBP17.33■□□□□ 0.37
SHANK1-201ENST00000293441 RPS6KA6Q9UK32 745 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 E9PAM4 449 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 B4GALT4O60513 344 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 UGT2B4P06133 528 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 RPL3P39023 403 aaKnown RBP17.33■□□□□ 0.37
SHANK1-201ENST00000293441 AIF1P55008 147 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 ARMC4Q5T2S8 1044 aa17.33■□□□□ 0.37
SHANK1-201ENST00000293441 CENPIQ92674 756 aaPredicted RBP17.33■□□□□ 0.37
SHANK1-201ENST00000293441 INPP4AQ96PE3 977 aaPredicted RBP17.33■□□□□ 0.37
SHANK1-201ENST00000293441 RASGRP1O95267 797 aa17.33■□□□□ 0.36
SHANK1-201ENST00000293441 SF1Q15637 639 aaKnown RBP17.33■□□□□ 0.36
SHANK1-201ENST00000293441 SNX30Q5VWJ9 437 aa17.33■□□□□ 0.36
SHANK1-201ENST00000293441 ZNF671Q8TAW3 534 aa17.33■□□□□ 0.36
SHANK1-201ENST00000293441 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.33■□□□□ 0.36
SHANK1-201ENST00000293441 RHBDL2Q9NX52 303 aa17.33■□□□□ 0.36
SHANK1-201ENST00000293441 DDI2Q5TDH0 399 aa17.33■□□□□ 0.36
SHANK1-201ENST00000293441 LIPMQ5VYY2 423 aa17.33■□□□□ 0.36
SHANK1-201ENST00000293441 OTOP3Q7RTS5 596 aa17.33■□□□□ 0.36
SHANK1-201ENST00000293441 MAGEE2Q8TD90 523 aaPredicted RBP17.33■□□□□ 0.36
SHANK1-201ENST00000293441 BSNDQ8WZ55 320 aa17.33■□□□□ 0.36
SHANK1-201ENST00000293441 GRIP2Q9C0E4 1043 aa17.33■□□□□ 0.36
SHANK1-201ENST00000293441 REXO4Q9GZR2 422 aaKnown RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms