RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 RUNX1T1Q06455 604 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MMRN1Q13201 1228 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ACAP1Q15027 740 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 NR0B2Q15466 257 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MAPRE2Q15555 327 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 LY6G5CQ5SRR4 150 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 AMZ2Q86W34 360 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 PAQR7Q86WK9 346 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 C7orf57Q8NEG2 295 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RFT1Q96AA3 541 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GMLQ99445 158 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 USB1Q9BQ65 265 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RAB11FIP5Q9BXF6 653 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 FAM126AQ9BYI3 521 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GPN2Q9H9Y4 310 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ZC3H7BQ9UGR2 993 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MAGEB16A2A368 324 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SLC28A1O00337 649 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 O00370 1275 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RFPL2O75678 378 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CDK4P11802 303 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 HLA-DPA1P20036 260 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 FGFR3P22607 806 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 PSMD4P55036 377 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GUCY1A3Q02108 690 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SMAD1Q15797 465 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ALFQ53S48 1182 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CHSY3Q70JA7 882 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 PRUNE1Q86TP1 453 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 FBXL6Q8N531 539 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RAB7BQ96AH8 199 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RMND5BQ96G75 393 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 KLHL32Q96NJ5 620 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 OSBPL8Q9BZF1 889 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ZDHHC5Q9C0B5 715 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 PHACTR1Q9C0D0 580 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 EPN3Q9H201 632 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 POLR1BQ9H9Y6 1135 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SGK2Q9HBY8 427 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 NGBQ9NPG2 151 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 IFT80Q9P2H3 777 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RARRES3Q9UL19 164 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GTF2A1LQ9UNN4 478 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MAPRE3Q9UPY8 281 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TRIM49BA6NDI0 452 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SEMA3DO95025 777 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 UMPSP11172 480 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 UCHL3P15374 230 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TCN2P20062 427 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GRK6P43250 576 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SEPHS1P49903 392 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SLC16A1P53985 500 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RAB2AP61019 212 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GRB10Q13322 594 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TXNDC8Q6A555 127 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 KIAA1211LQ6NV74 962 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 STK32CQ86UX6 486 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MAP4K3Q8IVH8 894 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RPLP0P6Q8NHW5 317 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 AIF1LQ9BQI0 150 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 EDEM2Q9BV94 578 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SLC2A11Q9BYW1 496 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 FAM83DQ9H4H8 585 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 COQ6Q9Y2Z9 468 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CAB39Q9Y376 341 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SNX8Q9Y5X2 465 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RAD54BQ9Y620 910 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ADGRG1Q9Y653 693 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RPS6KL1Q9Y6S9 549 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ATRNL1Q5VV63 1379 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 CASZ1Q86V15 1759 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 BTAF1O14981 1849 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 MYH14Q7Z406 1995 aaKnown RBP5.04□□□□□ -1.6
SCN1A-218ENST00000640036 TTC3P53804 2025 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 TLX3O43711 291 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-218ENST00000640036 KRT75O95678 551 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 GUCY2DQ02846 1103 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.04□□□□□ -1.62e-6■■□□□ 12
SCN1A-218ENST00000640036 CFAP206Q8IYR0 622 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 FBXO39Q8N4B4 442 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 MYO19Q96H55 970 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 HSPA12BQ96MM6 686 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 GOLGA2P5Q9HBQ8 144 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 HHATLQ9HCP6 504 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 APOBEC3BQ9UH17 382 aaKnown RBP5.04□□□□□ -1.6
SCN1A-218ENST00000640036 ABCB7O75027 752 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 RABIFP47224 123 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 CSTF3Q12996 717 aaKnown RBP5.04□□□□□ -1.6
SCN1A-218ENST00000640036 PDIA2Q13087 525 aaKnown RBP5.04□□□□□ -1.6
SCN1A-218ENST00000640036 SNCBQ16143 134 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 NFIL3Q16649 462 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 PKDCCQ504Y2 493 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 PRRT3Q5FWE3 981 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 MORN1Q5T089 497 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 DNAAF5Q86Y56 855 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 ZCCHC9Q8N567 271 aaKnown RBP5.04□□□□□ -1.6
SCN1A-218ENST00000640036 TAS1R2Q8TE23 839 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 ZNF606Q8WXB4 792 aa5.04□□□□□ -1.6
SCN1A-218ENST00000640036 SEMA3CQ99985 751 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms