RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LOC100653049A0A140TA62 436 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 IQCMA0A1B0GVH7 501 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SYN3O14994 580 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CCDC166P0CW27 439 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SLC7A1P30825 629 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 VBP1P61758 197 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SF3B4Q15427 424 aaKnown RBP eCLIP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ANXA8L1Q5VT79 327 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 PGM2L1Q6PCE3 622 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 FAM126BQ8IXS8 530 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 STAG3L4Q8TBR4 150 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TEX47Q8TBZ9 253 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 EEF1AKMT1Q8WVE0 214 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 NELL1Q92832 810 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 UPF1Q92900 1129 aaKnown RBP eCLIP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 POP5Q969H6 163 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 C10orf88Q9H8K7 445 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MBD2Q9UBB5 411 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SPATA2Q9UM82 520 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 PCDHA3Q9Y5H8 950 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 DLGAP3O95886 979 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 HCAR3P49019 387 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 NDUFA5Q16718 116 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 DUPD1Q68J44 220 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF470Q6ECI4 717 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CAPN13Q6MZZ7 669 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 RAD51AP1Q96B01 352 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SLC22A18Q96BI1 424 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 DZANK1Q9NVP4 752 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 IFT52Q9Y366 437 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 LRRC7Q96NW7 1537 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CNTNAP5Q8WYK1 1306 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 GMFGO60234 142 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 FAM20BO75063 409 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 WFS1O76024 890 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TPH1P17752 444 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 NT5EP21589 574 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 HSD3B2P26439 372 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 GGCXP38435 758 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SARSP49591 514 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CLCN7P51798 805 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MCL1Q07820 350 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 C4orf33Q8N1A6 199 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 DNAAF1Q8NEP3 725 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TMEM134Q9H6X4 195 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 REEP1Q9H902 201 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 FAM105AQ9NUU6 356 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 RGS17Q9UGC6 210 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TRPS1Q9UHF7 1281 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 NDUFAF1Q9Y375 327 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF609O15014 1411 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 A0A1W2PQ72 361 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 UBDO15205 165 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 EOMESO95936 686 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ASLP04424 464 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 IRF2P14316 349 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 LPOP22079 712 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 FGFR3P22607 806 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ADSLP30566 484 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SSR2P43308 183 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 VPS26BQ4G0F5 336 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 STXBP5Q5T5C0 1151 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 RABEPKQ7Z6M1 372 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 IQCF2Q8IXL9 164 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 WFIKKN2Q8TEU8 576 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 OVCA2Q8WZ82 227 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MYLPFQ96A32 169 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MTMR8Q96EF0 704 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CPNE2Q96FN4 548 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TRNT1Q96Q11 434 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SH3GL2Q99962 352 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 RAB11FIP5Q9BXF6 653 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ABCB6Q9NP58 842 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TMPRSS11EQ9UL52 423 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SAMD4AQ9UPU9 718 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 WRBO00258 174 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 GSC2O15499 205 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 NR2C1P13056 603 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 RPS6KA3P51812 740 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CNTN2Q02246 1040 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 KCNT1Q5JUK3 1230 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ARMC8Q8IUR7 673 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 TMEM156Q8N614 296 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 IGDCC4Q8TDY8 1250 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CLP1Q92989 425 aaKnown RBP6.15□□□□□ -1.42
SCN1A-217ENST00000637988 SHCBP1LQ9BZQ2 653 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ALDH8A1Q9H2A2 487 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-217ENST00000637988 KIAA1210Q9ULL0 1709 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 C15orf38-AP3S2A0A0A6YYH1 394 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 IRGMA1A4Y4 181 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 MAN2B1O00754 1011 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 B3GALT2O43825 422 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 DRD4P21917 467 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 GDI1P31150 447 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 TROAPQ12815 778 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CRHR2Q13324 411 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 SLC29A2Q14542 456 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 PTF1AQ7RTS3 328 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ARPINQ7Z6K5 226 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 MON1AQ86VX9 555 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms