RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 ANKRD49Q8WVL7 239 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 NSMCE3Q96MG7 304 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 POMKQ9H5K3 350 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 ATP13A1Q9HD20 1204 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 GTSE1Q9NYZ3 720 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 PCDHGC4Q9Y5F7 938 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 PDE5AO76074 875 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 ATXN1LP0C7T5 689 aaKnown RBP12.48□□□□□ -0.41
CIITA-212ENST00000618207 SLC11A2P49281 568 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 RCN1Q15293 331 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 PARP15Q460N3 678 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 GPR158Q5T848 1215 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 TMCO4Q5TGY1 634 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 ZYG11AQ6WRX3 759 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 TMPRSS6Q8IU80 811 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 KLHDC8BQ8IXV7 354 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 DIS3LQ8TF46 1054 aaKnown RBP12.48□□□□□ -0.41
CIITA-212ENST00000618207 IGSF21Q96ID5 467 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 PRICKLE1Q96MT3 831 aaPredicted RBP12.48□□□□□ -0.41
CIITA-212ENST00000618207 SLC22A12Q96S37 553 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 FAM167BQ9BTA0 163 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 PRKD2Q9BZL6 878 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 MUC3BQ9H195 1237 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 VPS45Q9NRW7 570 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 UBA6A0AVT1 1052 aaPredicted RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 PRRG1O14668 218 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 HOXA2O43364 376 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 SNAP91O60641 907 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 HNRNPCL1O60812 293 aaKnown RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 PRAMEF11O60813 436 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 GOT2P00505 430 aaKnown RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 PDHA1P08559 390 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 SERPINF2P08697 491 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 HOXD9P28356 352 aaPredicted RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 FRG1Q14331 258 aaKnown RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 RABGAP1LQ5R372 815 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 AP1ARQ63HQ0 302 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 CILP2Q8IUL8 1156 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 CNTN4Q8IWV2 1026 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 CRIPAKQ8N1N5 446 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 EFHBQ8N7U6 833 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 CFAP61Q8NHU2 1237 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 CINPQ9BW66 212 aaPredicted RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 TLE6Q9H808 572 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 GOLGA8CPA6NN73 597 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 LDB2O43679 373 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 STC2O76061 302 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 KLHL2O95198 593 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 RHOCP08134 193 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 ZDHHC11BP0C7U3 371 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 TPBGLP0DKB5 382 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 TFEBP19484 476 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 ALDH1A3P47895 512 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 TUFMP49411 452 aaKnown RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 CDKN2DP55273 166 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 OXCT1P55809 520 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 RING1Q06587 406 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 HECTD2Q5U5R9 776 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 TRIM68Q6AZZ1 485 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 STYXQ8WUJ0 223 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 TMEM169Q96HH4 297 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 GPR78Q96P69 363 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 ALG9Q9H6U8 611 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 BPIFA1Q9NP55 256 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 TCF7L2Q9NQB0 619 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 PLK2Q9NYY3 685 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 TRPM5Q9NZQ8 1165 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 MTRRQ9UBK8 725 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 TSR3Q9UJK0 312 aaKnown RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 CCDC162PA2VCL2 907 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 HMGA1P17096 107 aaKnown RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 APLP1P51693 650 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 DEFB103AP81534 67 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 MSLNQ13421 630 aaPredicted RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 CUL3Q13618 768 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 SEMA3AQ14563 771 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 PPM1LQ5SGD2 360 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 SH2D4BQ5SQS7 431 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 SLC8B1Q6J4K2 584 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 SCUBE1Q8IWY4 988 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 CARNMT1Q8N4J0 409 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 TEX26Q8N6G2 289 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 PAF1Q8N7H5 531 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 SNX31Q8N9S9 440 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 OR6Y1Q8NGX8 325 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 OR6K2Q8NGY2 324 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 MAGEC3Q8TD91 643 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 PTCD2Q8WV60 388 aaKnown RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 CATSPER2Q96P56 530 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 MRPL46Q9H2W6 279 aaKnown RBP12.47□□□□□ -0.41
CIITA-212ENST00000618207 ARNT2Q9HBZ2 717 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 ANKRD6Q9Y2G4 727 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 C15orf41Q9Y2V0 281 aa12.47□□□□□ -0.41
CIITA-212ENST00000618207 ANKRD36A6QL64 1941 aa12.46□□□□□ -0.41
CIITA-212ENST00000618207 BMP1P13497 986 aa12.46□□□□□ -0.41
CIITA-212ENST00000618207 CCL5P13501 91 aa12.46□□□□□ -0.41
CIITA-212ENST00000618207 PMLP29590 882 aa12.46□□□□□ -0.41
CIITA-212ENST00000618207 HADHAP40939 763 aa12.46□□□□□ -0.41
CIITA-212ENST00000618207 RPL14P50914 215 aaKnown RBP12.46□□□□□ -0.41
CIITA-212ENST00000618207 YBEYP58557 167 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms