RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ENPP1P22413 925 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 PTGER1P34995 402 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 MAPK10P53779 464 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 BTKQ06187 659 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 ZNF33AQ06730 810 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 TEAD2Q15562 447 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 SPDYCQ5MJ68 293 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 GPATCH4Q5T3I0 446 aaKnown RBP4.67□□□□□ -1.66
LINC00540-201ENST00000611481 IFIT1BQ5T764 474 aaKnown RBP4.67□□□□□ -1.66
LINC00540-201ENST00000611481 CYP4A22Q5TCH4 519 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 HES3Q5TGS1 186 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 PPP4R3AQ6IN85 833 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 SEM1Q6ZVN7 128 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 PLPPR4Q7Z2D5 763 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 ARID3BQ8IVW6 561 aaPredicted RBP4.67□□□□□ -1.66
LINC00540-201ENST00000611481 DHX40Q8IX18 779 aaKnown RBP4.67□□□□□ -1.66
LINC00540-201ENST00000611481 FITM2Q8N6M3 262 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 CASKIN2Q8WXE0 1202 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 FATE1Q969F0 183 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 ZBTB9Q96C00 473 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 FBXL20Q96IG2 436 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 NAP1L5Q96NT1 182 aaPredicted RBP4.67□□□□□ -1.66
LINC00540-201ENST00000611481 LRRC3BQ96PB8 259 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 MAP7D2Q96T17 732 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 TOPORSQ9NS56 1045 aaPredicted RBP4.67□□□□□ -1.66
LINC00540-201ENST00000611481 TM7SF3Q9NS93 570 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 TMEM140Q9NV12 185 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 SLC23A1Q9UHI7 598 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 DNM3Q9UQ16 869 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 PIN4Q9Y237 131 aaKnown RBP4.67□□□□□ -1.66
LINC00540-201ENST00000611481 MYH6P13533 1939 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 hCG_1642624A0A1W2PR95 340 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 KLHL33A6NCF5 533 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 K7ENP7 123 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 AP1G1O43747 822 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 MOSPD3O75425 235 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 TADA2AO75478 443 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 BMP15O95972 392 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 ZBED1O96006 694 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 HSD3B1P14060 373 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 OR1D2P34982 312 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 CCT2P78371 535 aaKnown RBP4.66□□□□□ -1.66
LINC00540-201ENST00000611481 EIF2B5Q13144 721 aaKnown RBP4.66□□□□□ -1.66
LINC00540-201ENST00000611481 ADRM1Q16186 407 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 LONRF1Q17RB8 773 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 FBXO43Q4G163 708 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 MTX3Q5HYI7 312 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 ZNF484Q5JVG2 852 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 FAM171A1Q5VUB5 890 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 ZSCAN25Q6NSZ9 544 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 INO80CQ6PI98 192 aaPredicted RBP4.66□□□□□ -1.66
LINC00540-201ENST00000611481 TRMT1LQ7Z2T5 733 aaKnown RBP4.66□□□□□ -1.66
LINC00540-201ENST00000611481 SKAP1Q86WV1 359 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 CNPY4Q8N129 248 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 LRRC71Q8N4P6 559 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 CCDC33Q8N5R6 958 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 LNX1Q8TBB1 728 aaPredicted RBP4.66□□□□□ -1.66
LINC00540-201ENST00000611481 TSPEARQ8WU66 669 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 CCT6BQ92526 530 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 ERP27Q96DN0 273 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 CDK5RAP3Q96JB5 506 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 CCDC138Q96M89 665 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 FCRL4Q96PJ5 515 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 TAAR9Q96RI9 348 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 P2RY13Q9BPV8 354 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 BOLA2Q9H3K6 86 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 LDAHQ9H6V9 325 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 GAREM1Q9H706 876 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 FAM204AQ9H8W3 233 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 JMJD4Q9H9V9 463 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 IL1RAPL2Q9NP60 686 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 C14orf119Q9NWQ9 140 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 CLIC5Q9NZA1 410 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 AJAP1Q9UKB5 411 aaPredicted RBP4.66□□□□□ -1.66
LINC00540-201ENST00000611481 ADAM28Q9UKQ2 775 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.66□□□□□ -1.66
LINC00540-201ENST00000611481 PCDHB2Q9Y5E7 798 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 HIVEP3Q5T1R4 2406 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 PHLPP2Q6ZVD8 1323 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 PTPRDP23468 1912 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 CELSR2Q9HCU4 2923 aa4.66□□□□□ -1.66
LINC00540-201ENST00000611481 BSNQ9UPA5 3926 aa4.65□□□□□ -1.66
LINC00540-201ENST00000611481 COL1A2P08123 1366 aa4.65□□□□□ -1.66
LINC00540-201ENST00000611481 CELSR1Q9NYQ6 3014 aa4.65□□□□□ -1.66
LINC00540-201ENST00000611481 PRRG1O14668 218 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 TPP1O14773 563 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 GPAA1O43292 621 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 ANP32CO43423 234 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 PROM1O43490 865 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHGA12O60330 932 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 GPC3P51654 580 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 ACTR2P61160 394 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 NOMO3P69849 1222 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 SSBP2P81877 361 aaPredicted RBP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 DSC1Q08554 894 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 SLC10A2Q12908 348 aaPredicted RBP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 BYSLQ13895 437 aaKnown RBP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 PDE1CQ14123 709 aaPredicted RBP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 NOMO1Q15155 1222 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 LLGL1Q15334 1064 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms