RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 IFI16Q16666 785 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 ODF2Q5BJF6 829 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 LRRC73Q5JTD7 316 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 NCBP2-AS2Q69YL0 99 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 SLCO6A1Q86UG4 719 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 CCDC170Q8IYT3 715 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 CHCHD4Q8N4Q1 142 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 ATL2Q8NHH9 583 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 DUSP23Q9BVJ7 150 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 DNAJC28Q9NX36 388 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 TOR4AQ9NXH8 423 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 KCTD5Q9NXV2 234 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 KLK13Q9UKR3 277 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 ANKRD36A6QL64 1941 aa17.87■□□□□ 0.45
SHKBP1-204ENST00000594862 MFSD11O43934 449 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 LZTS3O60299 673 aaPredicted RBP17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 RFPL3O75679 317 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 PIAS2O75928 621 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 CSF2P04141 144 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 PROS1P07225 676 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 CD48P09326 243 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 C6P13671 934 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 CR2P20023 1033 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 DGKAP23743 735 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 IGFALSP35858 605 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 PEX5P50542 639 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 BNIP3Q12983 259 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 MMRN1Q13201 1228 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 PDE1CQ14123 709 aaPredicted RBP17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 FZD2Q14332 565 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 LRRC14Q15048 493 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 SPA17Q15506 151 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 DPPA4Q7L190 304 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 TP53INP2Q8IXH6 220 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 TC2NQ8N9U0 490 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 OR4C6Q8NH72 309 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 PCDH19Q8TAB3 1148 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 TBATAQ96M53 351 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 TSGA13Q96PP4 275 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 POLR1EQ9GZS1 481 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 USP29Q9HBJ7 922 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 DDX56Q9NY93 547 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 NCKIPSDQ9NZQ3 722 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 CSNK1G3Q9Y6M4 447 aa17.86■□□□□ 0.45
SHKBP1-204ENST00000594862 LRRD1A4D1F6 860 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 TRAFD1O14545 582 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 MUSKO15146 869 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 HTRA2O43464 458 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 SDC3O75056 442 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 NEBLO76041 1014 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 IPO7O95373 1038 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 CPP00450 1065 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 ELFN1P0C7U0 828 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 ZFXP17010 805 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 CKMT2P17540 419 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 SPINK2P20155 84 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 CA4P22748 312 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 KDELR1P24390 212 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 CCNCP24863 283 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 HTR1BP28222 390 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 CYLC1P35663 651 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 LIG3P49916 1009 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 HADHBP55084 474 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 MACC1Q6ZN28 852 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 TMPRSS7Q7RTY8 843 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 RHOT1Q8IXI2 618 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 NDUFAF2Q8N183 169 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 TEX26Q8N6G2 289 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 PNPLA1Q8N8W4 532 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 TP53I13Q8NBR0 393 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 GATA6Q92908 595 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 CALR3Q96L12 384 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 NLGN3Q9NZ94 848 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 SPEGQ15772 3267 aa17.85■□□□□ 0.45
SHKBP1-204ENST00000594862 IGF2RP11717 2491 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 GOLGA8CPA6NN73 597 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 MATN3O15232 486 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 LCA5LO95447 670 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 TOP3BO95985 862 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 CYP2A6P11509 494 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 MAGEA1P43355 309 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 ACADVLP49748 655 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 BLKP51451 505 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 ZNF75DP51815 510 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 MTM1Q13496 603 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 IRF4Q15306 451 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 ATP13A4Q4VNC1 1196 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 ZSWIM9Q86XI8 627 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 MAML1Q92585 1016 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 HDAC11Q96DB2 347 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 RNF157Q96PX1 679 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 PANX2Q96RD6 677 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 MAK16Q9BXY0 300 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 SPASTQ9UBP0 616 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 PHTF1Q9UMS5 762 aa17.84■□□□□ 0.45
SHKBP1-204ENST00000594862 AKAP13Q12802 2813 aa17.83■□□□□ 0.45
SHKBP1-204ENST00000594862 SHROOM3Q8TF72 1996 aa17.83■□□□□ 0.44
SHKBP1-204ENST00000594862 SPOPO43791 374 aa17.83■□□□□ 0.44
SHKBP1-204ENST00000594862 ACP1P24666 158 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms