RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	RPLP0	P05388	317 aa	Known RBP	13.7	□□□□□ -0.22
SS18-222	ENST00000582792	HGF	P14210	728 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	TIMP2	P16035	220 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	NOMO3	P69849	1222 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	FANCC	Q00597	558 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	UBXN1	Q04323	297 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	RAD51	Q06609	339 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	LRRC14	Q15048	493 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	TGIF1	Q15583	401 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	FAM72A	Q5TYM5	149 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	KLHDC7A	Q5VTJ3	777 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	FAM72D	Q6L9T8	149 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	NOP9	Q86U38	636 aa	Known RBP	13.7	□□□□□ -0.22
SS18-222	ENST00000582792	FAM72B	Q86X60	149 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	GKN2	Q86XP6	184 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	HID1	Q8IV36	788 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	OR6C4	Q8NGE1	309 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	CPA5	Q8WXQ8	436 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	TSACC	Q96A04	125 aa	Predicted RBP	13.7	□□□□□ -0.22
SS18-222	ENST00000582792	TBC1D31	Q96DN5	1066 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	TMEM74	Q96NL1	305 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	GPR34	Q9UPC5	381 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	FHOD1	Q9Y613	1164 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	SCN8A	Q9UQD0	1980 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792		A0A1W2PQC6	194 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	BUB1	O43683	1085 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	IGSF6	O95976	241 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	SERPINC1	P01008	464 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	MME	P08473	750 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	JMJD7	P0C870	316 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	LIPC	P11150	499 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	HTR1B	P28222	390 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	SUOX	P51687	545 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	SRSF6	Q13247	344 aa	Known RBP	13.69	□□□□□ -0.22
SS18-222	ENST00000582792	NFATC4	Q14934	902 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	NR1I3	Q14994	352 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	TCEA2	Q15560	299 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	CDO1	Q16878	200 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	C15orf59	Q2T9L4	293 aa	Predicted RBP	13.69	□□□□□ -0.22
SS18-222	ENST00000582792	WSCD2	Q2TBF2	565 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	CCDC14	Q49A88	953 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	TMEM52B	Q4KMG9	183 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	INO80D	Q53TQ3	878 aa	Predicted RBP	13.69	□□□□□ -0.22
SS18-222	ENST00000582792	NAA35	Q5VZE5	725 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	ENPP7	Q6UWV6	458 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	CASKIN2	Q8WXE0	1202 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	EXTL1	Q92935	676 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	ARHGAP9	Q9BRR9	750 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	NAA15	Q9BXJ9	866 aa	Known RBP	13.69	□□□□□ -0.22
SS18-222	ENST00000582792	MAGEB5	Q9BZ81	275 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	LRRN3	Q9H3W5	708 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	STARD5	Q9NSY2	213 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	PISD	Q9UG56	409 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	IL17B	Q9UHF5	180 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	COQ6	Q9Y2Z9	468 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	LRRK1	Q38SD2	2015 aa		13.69	□□□□□ -0.22
SS18-222	ENST00000582792	TERT	O14746	1132 aa	Known RBP	13.68	□□□□□ -0.22
SS18-222	ENST00000582792	PLEK	P08567	350 aa	Predicted RBP	13.68	□□□□□ -0.22
SS18-222	ENST00000582792	UCHL3	P15374	230 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	XPA	P23025	273 aa	Predicted RBP	13.68	□□□□□ -0.22
SS18-222	ENST00000582792	SDC4	P31431	198 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	SRP54	P61011	504 aa	Known RBP	13.68	□□□□□ -0.22
SS18-222	ENST00000582792	RHOA	P61586	193 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	ELP6	Q0PNE2	266 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	AGER	Q15109	404 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	SYCP1	Q15431	976 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	NYAP1	Q6ZVC0	841 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	STRADA	Q7RTN6	431 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	RD3	Q7Z3Z2	195 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	GPR156	Q8NFN8	814 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	ATL2	Q8NHH9	583 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	EPS8L1	Q8TE68	723 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	RXFP2	Q8WXD0	754 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	TMEM159	Q96B96	161 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	RBM15	Q96T37	977 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
SS18-222	ENST00000582792	APOO	Q9BUR5	198 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	TRIM4	Q9C037	500 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	GAN	Q9H2C0	597 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	NOL6	Q9H6R4	1146 aa	Known RBP	13.68	□□□□□ -0.22
SS18-222	ENST00000582792	KL	Q9UEF7	1012 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	APPL1	Q9UKG1	709 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	LOXL2	Q9Y4K0	774 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	BSN	Q9UPA5	3926 aa		13.68	□□□□□ -0.22
SS18-222	ENST00000582792	C2CD4B	A6NLJ0	364 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	TEX33	O43247	280 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	CBFA2T2	O43439	604 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	TNF	P01375	233 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	TPM3	P06753	285 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	SFTPC	P11686	197 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	GLB1	P16278	677 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	ITGB6	P18564	788 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	ITIH1	P19827	911 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	MMP8	P22894	467 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	PTPN9	P43378	593 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	UBASH3A	P57075	661 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	ZFP36L1	Q07352	338 aa	Known RBP	13.67	□□□□□ -0.22
SS18-222	ENST00000582792	INPP5A	Q14642	412 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	ZNF354C	Q86Y25	554 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	CCNJL	Q8IV13	435 aa		13.67	□□□□□ -0.22
SS18-222	ENST00000582792	CCDC185	Q8N715	623 aa		13.67	□□□□□ -0.22

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