RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 COPS7BQ9H9Q2 264 aaPredicted RBP6.01□□□□□ -1.45
VPS53-219ENST00000576019 PCDH18Q9HCL0 1135 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 KCNK9Q9NPC2 374 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 TRMT1Q9NXH9 659 aaKnown RBP6.01□□□□□ -1.45
VPS53-219ENST00000576019 SERTAD3Q9UJW9 196 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 PCDHB2Q9Y5E7 798 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 POMT1Q9Y6A1 747 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 CAPN7Q9Y6W3 813 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 SIPA1L3O60292 1781 aaPredicted RBP6.01□□□□□ -1.45
VPS53-219ENST00000576019 CCDC187A0A096LP49 1063 aa6□□□□□ -1.45
VPS53-219ENST00000576019 CCDC195A0A1B0GUA6 201 aa6□□□□□ -1.45
VPS53-219ENST00000576019 UBE2QL1A1L167 161 aa6□□□□□ -1.45
VPS53-219ENST00000576019 LOC730098B7Z3J9 87 aa6□□□□□ -1.45
VPS53-219ENST00000576019 CHL1O00533 1208 aa6□□□□□ -1.45
VPS53-219ENST00000576019 SLC30A4O14863 429 aa6□□□□□ -1.45
VPS53-219ENST00000576019 NKX2-8O15522 239 aa6□□□□□ -1.45
VPS53-219ENST00000576019 HOXA3O43365 443 aaPredicted RBP6□□□□□ -1.45
VPS53-219ENST00000576019 MBTPS2O43462 519 aa6□□□□□ -1.45
VPS53-219ENST00000576019 VNN1O95497 513 aa6□□□□□ -1.45
VPS53-219ENST00000576019 CD72P21854 359 aa6□□□□□ -1.45
VPS53-219ENST00000576019 EPHA3P29320 983 aa6□□□□□ -1.45
VPS53-219ENST00000576019 IL13P35225 146 aa6□□□□□ -1.45
VPS53-219ENST00000576019 EPHB3P54753 998 aa6□□□□□ -1.45
VPS53-219ENST00000576019 HDAC4P56524 1084 aa6□□□□□ -1.45
VPS53-219ENST00000576019 TAS2R50P59544 299 aa6□□□□□ -1.45
VPS53-219ENST00000576019 PRAMEP78395 509 aa6□□□□□ -1.45
VPS53-219ENST00000576019 HGFACQ04756 655 aa6□□□□□ -1.45
VPS53-219ENST00000576019 CDK18Q07002 472 aa6□□□□□ -1.45
VPS53-219ENST00000576019 SEMA3BQ13214 749 aa6□□□□□ -1.45
VPS53-219ENST00000576019 E2F2Q14209 437 aa6□□□□□ -1.45
VPS53-219ENST00000576019 CSRP2Q16527 193 aa6□□□□□ -1.45
VPS53-219ENST00000576019 OLFML2BQ68BL8 750 aa6□□□□□ -1.45
VPS53-219ENST00000576019 NUP54Q7Z3B4 507 aa6□□□□□ -1.45
VPS53-219ENST00000576019 CCDC186Q7Z3E2 898 aa6□□□□□ -1.45
VPS53-219ENST00000576019 LILRB1Q8NHL6 650 aaPredicted RBP6□□□□□ -1.45
VPS53-219ENST00000576019 GSDMBQ8TAX9 411 aa6□□□□□ -1.45
VPS53-219ENST00000576019 POC1BQ8TC44 478 aa6□□□□□ -1.45
VPS53-219ENST00000576019 GRK7Q8WTQ7 553 aa6□□□□□ -1.45
VPS53-219ENST00000576019 KCNJ9Q92806 393 aa6□□□□□ -1.45
VPS53-219ENST00000576019 PTP4A1Q93096 173 aa6□□□□□ -1.45
VPS53-219ENST00000576019 CABS1Q96KC9 395 aa6□□□□□ -1.45
VPS53-219ENST00000576019 PRMT6Q96LA8 375 aaPredicted RBP6□□□□□ -1.45
VPS53-219ENST00000576019 CCDC43Q96MW1 224 aaKnown RBP6□□□□□ -1.45
VPS53-219ENST00000576019 C17orf80Q9BSJ5 609 aa6□□□□□ -1.45
VPS53-219ENST00000576019 SLC6A17Q9H1V8 727 aa6□□□□□ -1.45
VPS53-219ENST00000576019 MMADHCQ9H3L0 296 aaPredicted RBP6□□□□□ -1.45
VPS53-219ENST00000576019 SPATS2LQ9NUQ6 558 aaKnown RBP6□□□□□ -1.45
VPS53-219ENST00000576019 CTNND2Q9UQB3 1225 aa6□□□□□ -1.45
VPS53-219ENST00000576019 R4GN57 208 aa6□□□□□ -1.45
VPS53-219ENST00000576019 MAP3K15Q6ZN16 1313 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 A0A1B0GUL6 1792 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 A0A1W2PQF6 199 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 A8MZ25 164 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 INO80B-WBP1J3KQ70 363 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 DDX39AO00148 427 aaKnown RBP5.99□□□□□ -1.45
VPS53-219ENST00000576019 CXCL11O14625 94 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 SYNCRIPO60506 623 aaKnown RBP5.99□□□□□ -1.45
VPS53-219ENST00000576019 HMMRO75330 724 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 CCDC175P0C221 793 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 TMEM225BP0DP42 221 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 DESP17661 470 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 GABRB1P18505 474 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 PPIFP30405 207 aaKnown RBP5.99□□□□□ -1.45
VPS53-219ENST00000576019 HNF1BP35680 557 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 CHN2P52757 468 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 MRPS35P82673 323 aaKnown RBP5.99□□□□□ -1.45
VPS53-219ENST00000576019 FRG1Q14331 258 aaKnown RBP5.99□□□□□ -1.45
VPS53-219ENST00000576019 CLCA4Q14CN2 919 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 LY6KQ17RY6 165 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 NKAPLQ5M9Q1 402 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 N4BP2L1Q5TBK1 243 aaPredicted RBP5.99□□□□□ -1.45
VPS53-219ENST00000576019 FAM90A2PQ658T7 463 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 TMEM81Q6P7N7 255 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 SUSD1Q6UWL2 747 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 UNC5DQ6UXZ4 953 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 Q6ZUG5 572 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 KBTBD6Q86V97 674 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 SYT2Q8N9I0 419 aaPredicted RBP5.99□□□□□ -1.45
VPS53-219ENST00000576019 TRIML1Q8N9V2 468 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 SUMF1Q8NBK3 374 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 KIF18AQ8NI77 898 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 NOC3LQ8WTT2 800 aaKnown RBP5.99□□□□□ -1.45
VPS53-219ENST00000576019 CNOT9Q92600 299 aaKnown RBP5.99□□□□□ -1.45
VPS53-219ENST00000576019 EXOC4Q96A65 974 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 C1orf74Q96LT6 269 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 VN1R3Q9BXE9 311 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 L2HGDHQ9H9P8 463 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 PEMTQ9UBM1 199 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 STEAP1Q9UHE8 339 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 CDH22Q9UJ99 828 aa5.99□□□□□ -1.45
VPS53-219ENST00000576019 ZFHX3Q15911 3703 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 NOTCH2Q04721 2471 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 NBPF19A0A087WUL8 3843 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 TRAV34A0A0B4J273 112 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 A0A0G2JLL6 359 aaPredicted RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 KCNJ18B7U540 433 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 SLC22A3O75751 556 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 C1QL1O75973 258 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 RECQL4O94761 1208 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 ABCB1P08183 1280 aaPredicted RBP5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms