RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ZNF347Q96SE7 839 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SH3GL1Q99961 368 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 CNPY3Q9BT09 278 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 ZBTB26Q9HCK0 441 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 WDR70Q9NW82 654 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SMPD3Q9NY59 655 aaPredicted RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 HESX1Q9UBX0 185 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SLC30A1Q9Y6M5 507 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 H0Y626 953 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 GPR25O00155 361 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 TRIM16O95361 564 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 ASS1P00966 412 aaKnown RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 APOA1P02647 267 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SNRPB2P08579 225 aaKnown RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 PLK1P53350 603 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 TRIM32Q13049 653 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 USP41Q3LFD5 358 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 BOLA3Q53S33 107 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 GRTP1Q5TC63 336 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 STK32CQ86UX6 486 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 BRSK2Q8IWQ3 736 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 PDPRQ8NCN5 879 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 ABHD11Q8NFV4 315 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SLC7A3Q8WY07 619 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 TFAP2CQ92754 450 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 CPXM1Q96SM3 734 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 CPNE1Q99829 537 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 CHID1Q9BWS9 393 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 IARS2Q9NSE4 1012 aaKnown RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 TMEM9Q9P0T7 183 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 HMX2A2RU54 273 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 C9JVG2 144 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 B4GAT1O43505 415 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CCDC159P0C7I6 412 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 NCAM1P13591 858 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CYP2F1P24903 491 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 GNL1P36915 607 aaPredicted RBP9.63□□□□□ -0.87
CCDC40-212ENST00000574799 DPP6P42658 865 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 PHC1P78364 1004 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CCDC142Q17RM4 750 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 PPP4R4Q6NUP7 873 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 ZPBP2Q6X784 338 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TICAM1Q8IUC6 712 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 MICU2Q8IYU8 434 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 S100ZQ8WXG8 99 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 EMID1Q96A84 441 aaPredicted RBP9.63□□□□□ -0.87
CCDC40-212ENST00000574799 SLC10A4Q96EP9 437 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 DEPDC7Q96QD5 511 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CGREF1Q99674 301 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 SLC25A23Q9BV35 468 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 PRM3Q9NNZ6 103 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TBC1D13Q9NVG8 400 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TBC1D14Q9P2M4 693 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 MTRRQ9UBK8 725 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 SUCOQ9UBS9 1254 aaKnown RBP9.63□□□□□ -0.87
CCDC40-212ENST00000574799 HMGXB4Q9UGU5 601 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 ZDHHC2Q9UIJ5 367 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 PCDHGA3Q9Y5H0 932 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.63□□□□□ -0.87
CCDC40-212ENST00000574799 H0YJX3 145 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TBC1D4O60343 1298 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TADA2AO75478 443 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 APOA4P06727 396 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 MZF1P28698 734 aaPredicted RBP9.63□□□□□ -0.87
CCDC40-212ENST00000574799 ARRB2P32121 409 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CAPGP40121 348 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 RPS9P46781 194 aaKnown RBP9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CLCN3P51790 818 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 GBE1Q04446 702 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 LAMC2Q13753 1193 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 DGUOKQ16854 277 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CCNYL2Q5T2Q4 361 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 LIPMQ5VYY2 423 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 REP15Q6BDI9 236 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TAF2Q6P1X5 1199 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TRAF7Q6Q0C0 670 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TIFABQ6ZNK6 161 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 PEX5LQ8IYB4 626 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 ARFGAP1Q8N6T3 406 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CLIP3Q96DZ5 547 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 RNF145Q96MT1 663 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 SYBUQ9NX95 663 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 FLRT1Q9NZU1 646 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 PRORSD1PA6NEY8 169 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 EIF3FO00303 357 aaPredicted RBP9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CCRL2O00421 344 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 NRP2O60462 931 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CCNKO75909 580 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 GLDCP23378 1020 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 ELK4P28324 431 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CLK1P49759 484 aaKnown RBP9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CLCQ05315 142 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 SLC13A2Q13183 592 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 TMTC4Q5T4D3 741 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 ERMP1Q7Z2K6 904 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 GATAD2AQ86YP4 633 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 CMASQ8NFW8 434 aaPredicted RBP9.63□□□□□ -0.87
CCDC40-212ENST00000574799 FAM149B1Q96BN6 582 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 SPATA33Q96N06 139 aa9.63□□□□□ -0.87
CCDC40-212ENST00000574799 NAT9Q9BTE0 207 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms