RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 MYF5P13349 255 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 SERPINB6P35237 376 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 GJC1P36383 396 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 MMRN1Q13201 1228 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 IRF4Q15306 451 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 SLC18A3Q16572 532 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 WSCD2Q2TBF2 565 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 KCTD6Q8NC69 237 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 ZNF548Q8NEK5 533 aaPredicted RBP20.88■□□□□ 0.93
CLN3-219ENST00000565778 APOLD1Q96LR9 279 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 EVA1BQ9NVM1 165 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 SPASTQ9UBP0 616 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 ASPMQ8IZT6 3477 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.87■□□□□ 0.93
CLN3-219ENST00000565778 A8MX80 341 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 CKMT1AP12532 417 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 MMP12P39900 470 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 DUSP3P51452 185 aaPredicted RBP20.87■□□□□ 0.93
CLN3-219ENST00000565778 AP1S1P61966 158 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 ATP13A4Q4VNC1 1196 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 MARC1Q5VT66 337 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 ATPAF2Q8N5M1 289 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 RNF214Q8ND24 703 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 ECHDC3Q96DC8 303 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 IL12RB2Q99665 862 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 SLC13A1Q9BZW2 595 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 SCUBE2Q9NQ36 999 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 RCOR3Q9P2K3 495 aaPredicted RBP20.87■□□□□ 0.93
CLN3-219ENST00000565778 UVRAGQ9P2Y5 699 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 APOBEC3BQ9UH17 382 aaKnown RBP20.87■□□□□ 0.93
CLN3-219ENST00000565778 NENFQ9UMX5 172 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 PCDHGC4Q9Y5F7 938 aa20.87■□□□□ 0.93
CLN3-219ENST00000565778 TDRD6O60522 2096 aaKnown RBP20.86■□□□□ 0.93
CLN3-219ENST00000565778 TMEM110-MUSTN1A8MSY1 372 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 AKR1B10O60218 316 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 PROSCO94903 275 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 PEX11BO96011 259 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 CD48P09326 243 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 IL4RP24394 825 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 HSPA9P38646 679 aaKnown RBP20.86■□□□□ 0.93
CLN3-219ENST00000565778 PEX5P50542 639 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 PPARDQ03181 441 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 C1orf61Q13536 156 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 INPP5AQ14642 412 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 DEFB133Q30KQ1 61 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 PRRT3Q5FWE3 981 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 ZFYVE27Q5T4F4 411 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 PHACTR4Q8IZ21 702 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 RBFAQ8N0V3 343 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 FAM181AQ8N9Y4 354 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 PDCD6IPQ8WUM4 868 aaKnown RBP20.86■□□□□ 0.93
CLN3-219ENST00000565778 NSMCE3Q96MG7 304 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 DNAJC7Q99615 494 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 APOOQ9BUR5 198 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 PACSIN1Q9BY11 444 aa20.86■□□□□ 0.93
CLN3-219ENST00000565778 TCEAL2Q9H3H9 227 aaPredicted RBP20.86■□□□□ 0.93
CLN3-219ENST00000565778 SSU72P8A0A1W2PR75 194 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 CFAP69A5D8W1 941 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 TRAFD1O14545 582 aaPredicted RBP20.85■□□□□ 0.93
CLN3-219ENST00000565778 HTR1BP28222 390 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 ADKP55263 362 aaKnown RBP20.85■□□□□ 0.93
CLN3-219ENST00000565778 INSM1Q01101 510 aaPredicted RBP20.85■□□□□ 0.93
CLN3-219ENST00000565778 ASTE1Q2TB18 679 aaPredicted RBP20.85■□□□□ 0.93
CLN3-219ENST00000565778 ZCCHC8Q6NZY4 707 aaKnown RBP20.85■□□□□ 0.93
CLN3-219ENST00000565778 ENPP7Q6UWV6 458 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 LIPIQ6XZB0 460 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 MACC1Q6ZN28 852 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 CPNE8Q86YQ8 564 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 LRRC49Q8IUZ0 686 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 MAP7D3Q8IWC1 876 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 PGBD5Q8N414 524 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 NUDCD1Q96RS6 583 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 ABCG4Q9H172 646 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 USP29Q9HBJ7 922 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 CLCA2Q9UQC9 943 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 IGF2RP11717 2491 aa20.85■□□□□ 0.93
CLN3-219ENST00000565778 ARID1BQ8NFD5 2236 aaPredicted RBP20.84■□□□□ 0.93
CLN3-219ENST00000565778 A0A1W2PQ67 120 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 TPP1O14773 563 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 GCATO75600 419 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 RECQL5O94762 991 aaPredicted RBP20.84■□□□□ 0.93
CLN3-219ENST00000565778 PCCBP05166 539 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 ELFN1P0C7U0 828 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 MMP13P45452 471 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 MAXP61244 160 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 AGERQ15109 404 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 PDK2Q15119 407 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 RD3Q7Z3Z2 195 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 VSTM4Q8IW00 320 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 FAM71BQ8TC56 605 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 CCDC42Q96M95 316 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 CHP1Q99653 195 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 NOD2Q9HC29 1040 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 DKK4Q9UBT3 224 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 LCMT1Q9UIC8 334 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 SALL4Q9UJQ4 1053 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 PNMA8BQ9ULN7 279 aaPredicted RBP20.84■□□□□ 0.93
CLN3-219ENST00000565778 OR1A2Q9Y585 309 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 AK5Q9Y6K8 562 aa20.84■□□□□ 0.93
CLN3-219ENST00000565778 CPED1A4D0V7 1026 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms