RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 JAMLQ86YT9 394 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 UMODL1-AS1Q8N2C9 162 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 PCDH19Q8TAB3 1148 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 CCDC74AQ96AQ1 378 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 VOPP1Q96AW1 172 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 WDR92Q96MX6 357 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 TUBGCP5Q96RT8 1024 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 LRRN3Q9H3W5 708 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 NOL6Q9H6R4 1146 aaKnown RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 SEPT10Q9P0V9 454 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 UBA2Q9UBT2 640 aaPredicted RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 ATXN7L1Q9ULK2 861 aaPredicted RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 PNMA8BQ9ULN7 279 aaPredicted RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 DGKBQ9Y6T7 804 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 TSPAN11A1L157 253 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 CACNB4O00305 520 aaPredicted RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 PDE2AO00408 941 aaPredicted RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 NVLO15381 856 aaKnown RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 INSIG1O15503 277 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 ZW10O43264 779 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 SFTPCP11686 197 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 GLB1P16278 677 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 CCKBRP32239 447 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 LIG3P49916 1009 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 ZNF143P52747 638 aaPredicted RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 NDST2P52849 883 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 KCNC4Q03721 635 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 PTP4A2Q12974 167 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 OGFOD3Q6PK18 319 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 TAF8Q7Z7C8 310 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 PYROXD2Q8N2H3 581 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 PAF1Q8N7H5 531 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 ZSCAN1Q8NBB4 408 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 KYQ8NBH2 561 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 C3orf20Q8ND61 904 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 ENOX1Q8TC92 643 aaKnown RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 PCMTD1Q96MG8 357 aaPredicted RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 RBM15Q96T37 977 aaKnown RBP eCLIP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 CMKLR1Q99788 373 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 ARHGAP9Q9BRR9 750 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 CNPY3Q9BT09 278 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 SEMA4CQ9C0C4 833 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 KLC2Q9H0B6 622 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 NUP62CLQ9H1M0 184 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 VPS16Q9H269 839 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 GANQ9H2C0 597 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 CLMPQ9H6B4 373 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 PCDH12Q9NPG4 1184 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 NLRC4Q9NPP4 1024 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 FAM207AQ9NSI2 230 aaPredicted RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 TAB2Q9NYJ8 693 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 AKAP7Q9P0M2 348 aaPredicted RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 APPL1Q9UKG1 709 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 ACSL6Q9UKU0 697 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 FZD10Q9ULW2 581 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 NEU3Q9UQ49 428 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 ATP8A1Q9Y2Q0 1164 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 COQ6Q9Y2Z9 468 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 OR1A2Q9Y585 309 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 PCDHB11Q9Y5F2 797 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 HEMK1Q9Y5R4 338 aaPredicted RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 HELZ2Q9BYK8 2649 aaKnown RBP9.24□□□□□ -0.93
HDDC3-204ENST00000559834 LAMA5O15230 3695 aa9.24□□□□□ -0.93
HDDC3-204ENST00000559834 A0A1W2PQM1 296 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 PMS2P1A4D2B8 440 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 ARHGAP42A6NI28 874 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 EIF3CLB5ME19 914 aaKnown RBP9.23□□□□□ -0.93
HDDC3-204ENST00000559834 D6RAR5 112 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 TNFRSF10CO14798 259 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 SLC28A2O43868 658 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 PALMO75781 387 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 PIGNO95427 931 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 ITGB2P05107 769 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 PCCBP05166 539 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 CELA2BP08218 269 aaPredicted RBP9.23□□□□□ -0.93
HDDC3-204ENST00000559834 HOXC4P09017 264 aaPredicted RBP9.23□□□□□ -0.93
HDDC3-204ENST00000559834 CCDC172P0C7W6 258 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 SERPINA4P29622 427 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 CSNK1DP48730 415 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 PDX1P52945 283 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 JAM2P57087 298 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 TPI1P60174 286 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 C1QBPQ07021 282 aaKnown RBP9.23□□□□□ -0.93
HDDC3-204ENST00000559834 NSUN2Q08J23 767 aaKnown RBP eCLIP9.23□□□□□ -0.93
HDDC3-204ENST00000559834 ARHGEF7Q14155 803 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 CLEC16AQ2KHT3 1053 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 TMEM164Q5U3C3 297 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 DNAJC24Q6P3W2 148 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 DCUN1D2Q6PH85 259 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 B3GNT8Q7Z7M8 397 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 SRLQ86TD4 932 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 CAMK1DQ8IU85 385 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 CCNJLQ8IV13 435 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 Q8N9G6 341 aaPredicted RBP9.23□□□□□ -0.93
HDDC3-204ENST00000559834 NETO2Q8NC67 525 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 FAM46DQ8NEK8 389 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 ANKRD20A12PQ8NF67 263 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 GPR156Q8NFN8 814 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 OR56A4Q8NGH8 313 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms