RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PIF1Q9H611 641 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SPAG4Q9NPE6 437 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 GPRC5DQ9NZD1 345 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SPATA7Q9P0W8 599 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 GJD2Q9UKL4 321 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ERGIC3Q9Y282 383 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 COL4A5P29400 1685 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 LCTP09848 1927 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 KPNA7A9QM74 516 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 AQP9O43315 295 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 MAN1A2O60476 641 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 MAFO75444 373 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ARIH2O95376 493 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 YBX3P16989 372 aaKnown RBP eCLIP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 FSHRP23945 695 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 AKAP5P24588 427 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 AXLP30530 894 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 LRPAP1P30533 357 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 IREB2P48200 963 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 KCNC1P48547 511 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PSMD8P48556 350 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 TMED10P49755 219 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 NKX2-5P52952 324 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 AP3M2P53677 418 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ESRRGP62508 458 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ZBTB17Q13105 803 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SPCS2Q15005 226 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 HERC3Q15034 1050 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PGS1Q32NB8 556 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SLC10A6Q3KNW5 377 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 VPS26BQ4G0F5 336 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 TBCELQ5QJ74 424 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ZNF618Q5T7W0 954 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 OTUD1Q5VV17 481 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 XAF1Q6GPH4 301 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 C8orf82Q6P1X6 216 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ITIH5Q86UX2 942 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 DHFR2Q86XF0 187 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 RNF135Q8IUD6 432 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 NPWQ8N729 165 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SHCBP1Q8NEM2 672 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 NUDT8Q8WV74 236 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 NIFKQ9BYG3 293 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 IL22Q9GZX6 179 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 VPS33BQ9H267 617 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SMARCAD1Q9H4L7 1026 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 POMKQ9H5K3 350 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 FANCEQ9HB96 536 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 AGPAT4Q9NRZ5 378 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 RIC8BQ9NVN3 520 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SLAMF8Q9P0V8 285 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 KLQ9UEF7 1012 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SLC2A6Q9UGQ3 507 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 FADS3Q9Y5Q0 445 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SNX10Q9Y5X0 201 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 XIRP2A4UGR9 3374 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 RNF103-CHMP3A0A140T963 221 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 SOWAHBA6NEL2 793 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 H0YJX3 145 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 ACKR2O00590 384 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 DPYSL4O14531 572 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 MRASO14807 208 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 CLOCKO15516 846 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 KPNA6O60684 536 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 TCF3P15923 654 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 ZNF12P17014 697 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 RPS12P25398 132 aaKnown RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 ARNTP27540 789 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 SHMT2P34897 504 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 GJA8P48165 433 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 PRPSAP1Q14558 356 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 POLD3Q15054 466 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 SF3B4Q15427 424 aaKnown RBP eCLIP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 BCL2A1Q16548 175 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 MOGQ16653 247 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 ARHGAP17Q68EM7 881 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 MAGEE2Q8TD90 523 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 HEXDCQ8WVB3 486 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 HDAC10Q969S8 669 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 PHF21BQ96EK2 531 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 FEM1CQ96JP0 617 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 GLT1D1Q96MS3 346 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 MUS81Q96NY9 551 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 TCF12Q99081 682 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 LHPPQ9H008 270 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 LRRC4Q9HBW1 653 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 DPP3Q9NY33 737 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 ERAP1Q9NZ08 941 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 RNF181Q9P0P0 153 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 KLHL8Q9P2G9 620 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 SARDHQ9UL12 918 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 CPQQ9Y646 472 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 IGKV6D-21A0A0A0MT36 114 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 A0A1B0GTL3 188 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 LRRC14BA6NHZ5 514 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 FXYD1O00168 92 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 UBDO15205 165 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 SYNCRIPO60506 623 aaKnown RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 JRKO75564 520 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 DDHD2O94830 711 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms