RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 PRLP01236 227 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 TRBC1P01850 177 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 UGT2B4P06133 528 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 CYP2A6P11509 494 aaPredicted RBP16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 HLA-EP13747 358 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 ZNF30P17039 623 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 IHHQ14623 411 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 UBXN2BQ14CS0 331 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 CRY1Q16526 586 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 PCSK7Q16549 785 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 CCDC38Q502W7 563 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 SIRPB2Q5JXA9 342 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 EMC10Q5UCC4 262 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 DENND5AQ6IQ26 1287 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 USP30Q70CQ3 517 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 STK40Q8N2I9 435 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 SPEM1Q8N4L4 309 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 PAF1Q8N7H5 531 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 CHST14Q8NCH0 376 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 BRSK1Q8TDC3 778 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 PIH1D2Q8WWB5 315 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 CAVIN3Q969G5 261 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 FAM131CQ96AQ9 280 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 RMDN1Q96DB5 314 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 PKNOX2Q96KN3 472 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 CD248Q9HCU0 757 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 KCTD5Q9NXV2 234 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 SAMD15Q9P1V8 674 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 PLXND1Q9Y4D7 1925 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 CAPN8A6NHC0 703 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 UPK3BL1B0FP48 263 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 UPK3BL2E5RIL1 263 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 H0Y858 1186 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 BNIP3LO60238 219 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 CTSLP07711 333 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 ADRA1DP25100 572 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 NEK3P51956 506 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 SATB1Q01826 763 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 FZD5Q13467 585 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 FRG1Q14331 258 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 CST6Q15828 149 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 UGP2Q16851 508 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 ARSIQ5FYB1 569 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 PCID2Q5JVF3 399 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 ZDHHC20Q5W0Z9 365 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 ERAP2Q6P179 960 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 ZNF449Q6P9G9 518 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 TRMT10CQ7L0Y3 403 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 TAB3Q8N5C8 712 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 PPHLN1Q8NEY8 458 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 OR52K1Q8NGK4 314 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 OR6K2Q8NGY2 324 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 GRIN3AQ8TCU5 1115 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 AENQ8WTP8 325 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 KLHL32Q96NJ5 620 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 CDH19Q9H159 772 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 CD320Q9NPF0 282 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 FZD4Q9ULV1 537 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 CHKBQ9Y259 395 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 TECTAO75443 2155 aa16.11■□□□□ 0.17
PRPF40A-212ENST00000545856 MYLKQ15746 1914 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 SCN8AQ9UQD0 1980 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 FAM237BA0A1B0GVD1 139 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 PSMD11O00231 422 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 KPNA3O00505 521 aaPredicted RBP16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 AP1G1O43747 822 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 PIGNO95427 931 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 AGTP01019 485 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 IL1BP01584 269 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 DNTTP04053 509 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 XPAP23025 273 aaPredicted RBP16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 COPAP53621 1224 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 TRADDQ15628 312 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 QPCTQ16769 361 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 CYS1Q717R9 158 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 ERN2Q76MJ5 926 aaKnown RBP16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 MREGQ8N565 214 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 CAMKK1Q8N5S9 505 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 LPCAT1Q8NF37 534 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 PDCD6IPQ8WUM4 868 aaKnown RBP16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 SIGLEC10Q96LC7 697 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 EBNA1BP2Q99848 306 aaKnown RBP16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 KIFC1Q9BW19 673 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 KDM4CQ9H3R0 1056 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 MFSD1Q9H3U5 465 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 RAD18Q9NS91 495 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 SIT1Q9Y3P8 196 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 TEX264Q9Y6I9 313 aa16.1■□□□□ 0.17
PRPF40A-212ENST00000545856 RGSL1A5PLK6 1076 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 C2orf81A6NN90 581 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 C16orf96A6NNT2 1141 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 PGAM1P18669 254 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 CD72P21854 359 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 PSMA3P25788 255 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 CLCN5P51795 746 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 PTPN5P54829 565 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 ILF2Q12905 390 aaKnown RBP16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 TAF1AQ15573 450 aaPredicted RBP16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 TRIM67Q6ZTA4 783 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms