RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 STC2O76061 302 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 EFEMP2O95967 443 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 S1PR4O95977 384 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 SERPINF2P08697 491 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 TPBGLP0DKB5 382 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 RPL14P50914 215 aaKnown RBP16.42■□□□□ 0.22
COL4A1-204ENST00000543140 SCNN1BP51168 640 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 SLC25A3Q00325 362 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 LCA5Q86VQ0 697 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 TXNDC5Q8NBS9 432 aaKnown RBP16.42■□□□□ 0.22
COL4A1-204ENST00000543140 OR13C4Q8NGS5 318 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 AUTS2Q8WXX7 1259 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 MAGEH1Q9H213 219 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 GPAMQ9HCL2 828 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 CYP4F12Q9HCS2 524 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 AFF4Q9UHB7 1163 aaKnown RBP16.42■□□□□ 0.22
COL4A1-204ENST00000543140 PLA2G4CQ9UP65 541 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 BACE2Q9Y5Z0 518 aa16.42■□□□□ 0.22
COL4A1-204ENST00000543140 CBX4O00257 560 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 ZBTB14O43829 449 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 ZMPSTE24O75844 475 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 SLC4A1P02730 911 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 TFEBP19484 476 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 EPHA3P29320 983 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 CDKN2DP55273 166 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 HECTD2Q5U5R9 776 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 LSMEM2Q8N112 164 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 FEM1CQ96JP0 617 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 MRPL57Q9BQC6 102 aaKnown RBP16.41■□□□□ 0.22
COL4A1-204ENST00000543140 NUF2Q9BZD4 464 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 MFSD1Q9H3U5 465 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 TRPM5Q9NZQ8 1165 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 MATN2O00339 956 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 CLCN5P51795 746 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 CDH4P55283 916 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 OXCT1P55809 520 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 SESN3P58005 492 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 IKBKEQ14164 716 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 TSNAXIP1Q2TAA8 658 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 C5orf22Q49AR2 442 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 SLC39A5Q6ZMH5 540 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 PIM3Q86V86 326 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 SCUBE1Q8IWY4 988 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 ARHGAP24Q8N264 748 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 PDZD8Q8NEN9 1154 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 GABPB2Q8TAK5 448 aaPredicted RBP16.41■□□□□ 0.22
COL4A1-204ENST00000543140 ANKRD49Q8WVL7 239 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 FAM136AQ96C01 138 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 SMIM14Q96QK8 99 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 CYP2S1Q96SQ9 504 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 CINPQ9BW66 212 aaPredicted RBP16.41■□□□□ 0.22
COL4A1-204ENST00000543140 MMADHCQ9H3L0 296 aaPredicted RBP16.41■□□□□ 0.22
COL4A1-204ENST00000543140 POMKQ9H5K3 350 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 TCF7L2Q9NQB0 619 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 UBA2Q9UBT2 640 aaPredicted RBP16.41■□□□□ 0.22
COL4A1-204ENST00000543140 RPL26L1Q9UNX3 145 aaKnown RBP16.41■□□□□ 0.22
COL4A1-204ENST00000543140 VWA7Q9Y334 891 aa16.41■□□□□ 0.22
COL4A1-204ENST00000543140 TMEM233B4DJY2 109 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 KRT36O76013 467 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 GOT2P00505 430 aaKnown RBP16.4■□□□□ 0.22
COL4A1-204ENST00000543140 JUNP05412 331 aaKnown RBP16.4■□□□□ 0.22
COL4A1-204ENST00000543140 CCL5P13501 91 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 CD1EP15812 388 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 KCNA5P22460 613 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 ALDH1A3P47895 512 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 PLK1P53350 603 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 FAM83EQ2M2I3 478 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 SEL1L3Q68CR1 1132 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 RPS27LQ71UM5 84 aaKnown RBP16.4■□□□□ 0.22
COL4A1-204ENST00000543140 SHKBP1Q8TBC3 707 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 AGO1Q9UL18 857 aaKnown RBP16.4■□□□□ 0.22
COL4A1-204ENST00000543140 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.4■□□□□ 0.22
COL4A1-204ENST00000543140 CCDC162PA2VCL2 907 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 HDAC3O15379 428 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 FGF1P05230 155 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 RHOCP08134 193 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 HLA-DPA1P20036 260 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 CPOXP36551 454 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 ZNF177Q13360 481 aaPredicted RBP16.4■□□□□ 0.22
COL4A1-204ENST00000543140 RALGPS1Q5JS13 557 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 ULK2Q8IYT8 1036 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 RNF168Q8IYW5 571 aaPredicted RBP16.4■□□□□ 0.22
COL4A1-204ENST00000543140 DCLRE1BQ9H816 532 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 SEPT3Q9UH03 358 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 OGDHLQ9ULD0 1010 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 YIPF1Q9Y548 306 aa16.4■□□□□ 0.22
COL4A1-204ENST00000543140 ANAPC1Q9H1A4 1944 aa16.39■□□□□ 0.22
COL4A1-204ENST00000543140 ANKRD36A6QL64 1941 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 GRID2O43424 1007 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 ABLIM3O94929 683 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 PRSS56P0CW18 603 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 MYL4P12829 197 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 HNRNPLP14866 589 aaKnown RBP eCLIP16.39■□□□□ 0.21
COL4A1-204ENST00000543140 GNAZP19086 355 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 COPAP53621 1224 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 PRKAA1Q13131 559 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 MTA1Q13330 715 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 SEMA3AQ14563 771 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 RCN1Q15293 331 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 PDCD2Q16342 344 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms