RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TNNT1P13805 278 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 CD58P19256 250 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 GPTP24298 496 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 GNL1P36915 607 aaPredicted RBP2.81□□□□□ -1.96
NUP54-208ENST00000508604 PIGAP37287 484 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 USP8P40818 1118 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 PTPN9P43378 593 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 RELQ04864 619 aaPredicted RBP2.81□□□□□ -1.96
NUP54-208ENST00000508604 PDCLQ13371 301 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 NEDD9Q14511 834 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 ARHGEF6Q15052 776 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 SLC35E4Q6ICL7 350 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 CES5AQ6NT32 575 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 WDR73Q6P4I2 378 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 CEACAM20Q6UY09 585 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 LURAP1LQ8IV03 231 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 TMEM41AQ96HV5 264 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 TNIP3Q96KP6 325 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 LRRC1Q9BTT6 524 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 PRDM8Q9NQV8 689 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 NDRG3Q9UGV2 375 aa2.81□□□□□ -1.96
NUP54-208ENST00000508604 FAF1Q9UNN5 650 aaPredicted RBP2.81□□□□□ -1.96
NUP54-208ENST00000508604 C17orf100A8MU93 164 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 SOCS6O14544 535 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 FFAR2O15552 330 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 NBPF7P0C2Y1 421 aaPredicted RBP2.8□□□□□ -1.96
NUP54-208ENST00000508604 TTKP33981 857 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 TMPOP42166 694 aaKnown RBP2.8□□□□□ -1.96
NUP54-208ENST00000508604 IRX6P78412 446 aaPredicted RBP2.8□□□□□ -1.96
NUP54-208ENST00000508604 LCTLQ6UWM7 567 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 CHD1LQ86WJ1 897 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 KMT5CQ86Y97 462 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.8□□□□□ -1.96
NUP54-208ENST00000508604 SETD9Q8NE22 299 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 SCAMP5Q8TAC9 235 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 PARD3BQ8TEW8 1205 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 ALG14Q96F25 216 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 C17orf77Q96MU5 243 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 TRAPPC9Q96Q05 1148 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 NPLQ9BXD5 320 aaPredicted RBP2.8□□□□□ -1.96
NUP54-208ENST00000508604 PLEKHA5Q9HAU0 1116 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 ARFGAP3Q9NP61 516 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 KCND3Q9UK17 655 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 PSAT1Q9Y617 370 aa2.8□□□□□ -1.96
NUP54-208ENST00000508604 LOC105371045A0A1W2PR82 267 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 NDUFS7O75251 213 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 INHBAP08476 426 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 ZNF8P17098 575 aaPredicted RBP2.79□□□□□ -1.96
NUP54-208ENST00000508604 HOXA1P49639 335 aaPredicted RBP2.79□□□□□ -1.96
NUP54-208ENST00000508604 RBM5P52756 815 aaKnown RBP eCLIP2.79□□□□□ -1.96
NUP54-208ENST00000508604 RUNX2Q13950 521 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 CCNYL2Q5T2Q4 361 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 FMNL3Q8IVF7 1028 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 SPATA22Q8NHS9 363 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 TMEM170AQ8WVE7 144 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 PABPC3Q9H361 631 aaKnown RBP2.79□□□□□ -1.96
NUP54-208ENST00000508604 C17orf75Q9HAS0 396 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 OBP2BQ9NPH6 170 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 KLHL1Q9NR64 748 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 RALYQ9UKM9 306 aaKnown RBP2.79□□□□□ -1.96
NUP54-208ENST00000508604 LGALS16A8MUM7 142 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 BLOC1S5-TXNDC5H3BN57 136 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 EBAG9O00559 213 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 PLRG1O43660 514 aaKnown RBP2.79□□□□□ -1.96
NUP54-208ENST00000508604 CAVIN2O95810 425 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 ADAP00813 363 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 CYP21A2P08686 494 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 HNRNPH1P31943 449 aaKnown RBP2.79□□□□□ -1.96
NUP54-208ENST00000508604 BRWD1-AS2P59051 145 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 LPAL2Q16609 132 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 KCNT1Q5JUK3 1230 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 ARHGAP17Q68EM7 881 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 GJB7Q6PEY0 223 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 IL20RBQ6UXL0 311 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 RRAGAQ7L523 313 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 ZNF527Q8NB42 609 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 FSD1Q9BTV5 496 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 PLEKHA2Q9HB19 425 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 MCM9Q9NXL9 1143 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 RNF215Q9Y6U7 377 aa2.79□□□□□ -1.96
NUP54-208ENST00000508604 CRLF1O75462 422 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 PCNAP12004 261 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 PAX1P15863 534 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 CHATP28329 748 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 MCM2P49736 904 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 CSRP3P50461 194 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 LUMP51884 338 aaPredicted RBP2.78□□□□□ -1.96
NUP54-208ENST00000508604 ITGADQ13349 1161 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 EDRF1Q3B7T1 1238 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 PAPPA-AS1Q5QFB9 102 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 TRNP1Q6NT89 227 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 PGBD2Q6P3X8 592 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 GGT6Q6P531 493 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 SLC27A1Q6PCB7 646 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 KCTD8Q6ZWB6 473 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 SYT13Q7L8C5 426 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 ODF3L1Q8IXM7 274 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 BBS10Q8TAM1 723 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 CSGALNACT1Q8TDX6 532 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 HSPH1Q92598 858 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms