RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ICKQ9UPZ9 632 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 OSGIN2Q9Y236 505 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 CNPY2Q9Y2B0 182 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 PAM16Q9Y3D7 125 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 PTGDR2Q9Y5Y4 395 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 MORC2Q9Y6X9 1032 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-208ENST00000490788 TTC21AQ8NDW8 1320 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 UNC80Q8N2C7 3258 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 BCL9O00512 1426 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 CRB1P82279 1406 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 CCDC141Q6ZP82 1450 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 PRXQ9BXM0 1461 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 MBD5Q9P267 1494 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 NRXN1Q9ULB1 1477 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 AKAP12Q02952 1782 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 TUBGCP6Q96RT7 1819 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 MYO5BQ9ULV0 1848 aa2.31□□□□□ -2.04
HMGB1-208ENST00000490788 A0A1B0GVT2 93 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 DDTLA6NHG4 134 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 KDM4EB2RXH2 506 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PEX12O00623 359 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 HSPB6O14558 160 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 SMAD6O43541 496 aaKnown RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ITM2AO43736 263 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 TSPAN3O60637 253 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 FAM155BO75949 473 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 CELF2O95319 508 aaKnown RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 CYP21A2P08686 494 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 FGF2P09038 288 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ACAA1P09110 424 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 CSF1P09603 554 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ARSAP15289 507 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 AVPR2P30518 371 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ARRB2P32121 409 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 EPHX2P34913 555 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 GJC1P36383 396 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PPP3CCP48454 512 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PCYT1AP49585 367 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 MVDP53602 400 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 SELENOVP59797 346 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ZXDBP98169 803 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 SLC12A1Q13621 1099 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ERV3-1Q14264 604 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 TAF12Q16514 161 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ODF3L2Q3SX64 289 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 TUBB8Q3ZCM7 444 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 SYTL3Q4VX76 610 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 CBWD5Q5RIA9 395 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 RUSC1-AS1Q66K80 236 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 DENND1BQ6P3S1 775 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 SMAP1Q8IYB5 467 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PELI3Q8N2H9 469 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ANKRD42Q8N9B4 389 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 MIGA1Q8NAN2 632 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ENGASEQ8NFI3 743 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 OR14A16Q8NHC5 309 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 SPPL3Q8TCT6 385 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 HSPH1Q92598 858 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 STAMQ92783 540 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 ATOH1Q92858 354 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 NEUROG1Q92886 237 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 MIB2Q96AX9 1013 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 OTULINQ96BN8 352 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 TBC1D20Q96BZ9 403 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 SLC39A13Q96H72 371 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 MED30Q96HR3 178 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 COG8Q96MW5 612 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 GUCD1Q96NT3 240 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 CD180Q99467 661 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 MEIS3Q99687 375 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PYM1Q9BRP8 204 aaKnown RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 HERPUD2Q9BSE4 406 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 TM6SF1Q9BZW5 370 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 CTDSP1Q9GZU7 261 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 LHPPQ9H008 270 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 CDT1Q9H211 546 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PNNQ9H307 717 aaKnown RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PRO3102Q9H379 93 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 KLHL31Q9H511 634 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PPCSQ9HAB8 311 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PTPRHQ9HD43 1115 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 SLC22A11Q9NSA0 550 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 GRHL1Q9NZI5 618 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 SELENONQ9NZV5 590 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 IL36RNQ9UBH0 155 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 FEM1BQ9UK73 627 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 RALYQ9UKM9 306 aaKnown RBP2.3□□□□□ -2.04
HMGB1-208ENST00000490788 GDAQ9Y2T3 454 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 GPRASP1Q5JY77 1395 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 NAIPQ13075 1403 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 CDC42BPGQ6DT37 1551 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 TIAM2Q8IVF5 1701 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 COL18A1P39060 1754 aa2.3□□□□□ -2.04
HMGB1-208ENST00000490788 PAPPA2Q9BXP8 1791 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 NHSQ6T4R5 1651 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 CLTCL1P53675 1640 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 CNTNAP2Q9UHC6 1331 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 TARSL2A2RTX5 802 aaKnown RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 TYW5A2RUC4 315 aaKnown RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 SERINC4A6NH21 518 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms