RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 SLC47A1Q96FL8 570 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 PPP3R2Q96LZ3 170 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 B3GNT5Q9BYG0 378 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 AP3M1Q9Y2T2 418 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 NRG1Q02297 640 aaPredicted RBP17.7■□□□□ 0.42
NPHP4-209ENST00000489180 BNIP2Q12982 314 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 DLG2Q15700 870 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 NELL1Q92832 810 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 C18orf25Q96B23 403 aaPredicted RBP17.7■□□□□ 0.42
NPHP4-209ENST00000489180 P2RY11Q96G91 374 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 CLK4Q9HAZ1 481 aaKnown RBP17.7■□□□□ 0.42
NPHP4-209ENST00000489180 SLC27A5Q9Y2P5 690 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 HLA-DQA2P01906 255 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 SPIBQ01892 262 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 CPSF6Q16630 551 aaKnown RBP eCLIP17.7■□□□□ 0.42
NPHP4-209ENST00000489180 BMT2Q1RMZ1 405 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 FBXL19Q6PCT2 694 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 RDH11Q8TC12 318 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 MCRS1Q96EZ8 462 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 PCDH18Q9HCL0 1135 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 H3BMM5 538 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 BMP10O95393 424 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 CATP04040 527 aaKnown RBP17.7■□□□□ 0.42
NPHP4-209ENST00000489180 JAK1P23458 1154 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 TUFMP49411 452 aaKnown RBP17.7■□□□□ 0.42
NPHP4-209ENST00000489180 POLR2LP62875 67 aaKnown RBP17.7■□□□□ 0.42
NPHP4-209ENST00000489180 SFSWAPQ12872 951 aaKnown RBP17.7■□□□□ 0.42
NPHP4-209ENST00000489180 RALGDSQ12967 914 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 XKR6Q5GH73 641 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 CATSPERGQ6ZRH7 1159 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 ECHDC2Q86YB7 292 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 KLHL5Q96PQ7 755 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 NLNQ9BYT8 704 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 ZFYVE1Q9HBF4 777 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 FBXO10Q9UK96 956 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 FBXO5Q9UKT4 447 aa17.7■□□□□ 0.42
NPHP4-209ENST00000489180 OR6A2O95222 327 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 SMIM10L2AP0DMW4 78 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 SMIM10L2BP0DMW5 78 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 UQCRBP14927 111 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 CCT3P49368 545 aaKnown RBP17.69■□□□□ 0.42
NPHP4-209ENST00000489180 TTPAP49638 278 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 VGLL4Q14135 290 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 INTS11Q5TA45 600 aaKnown RBP17.69■□□□□ 0.42
NPHP4-209ENST00000489180 MYDGFQ969H8 173 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 LINGO1Q96FE5 620 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 CRISPLD1Q9H336 500 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 AK5Q9Y6K8 562 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 TBL1XO60907 577 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 ABRQ12979 859 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 FASTKD3Q14CZ7 662 aaKnown RBP17.69■□□□□ 0.42
NPHP4-209ENST00000489180 TMEM63BQ5T3F8 832 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 SAMHD1Q9Y3Z3 626 aaKnown RBP17.69■□□□□ 0.42
NPHP4-209ENST00000489180 SF3B1O75533 1304 aaKnown RBP eCLIP17.69■□□□□ 0.428e-6■■■■■ 107
NPHP4-209ENST00000489180 RPN2P04844 631 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 RNF220Q5VTB9 566 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 AAGABQ6PD74 315 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 CERS5Q8N5B7 392 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 FAM47BQ8NA70 645 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 MFSD14AQ96MC6 490 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 RTKNQ9BST9 563 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 TRIM39Q9HCM9 518 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 HBS1LQ9Y450 684 aaKnown RBP17.69■□□□□ 0.42
NPHP4-209ENST00000489180 U3KQV3 271 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 LGR5O75473 907 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 CYP2C18P33260 490 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 MRPS5P82675 430 aaKnown RBP17.69■□□□□ 0.42
NPHP4-209ENST00000489180 INSCQ1MX18 579 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 GPAT3Q53EU6 434 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 HLA-DQA1Q5Y7H0 255 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 HGSNATQ68CP4 663 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.69■□□□□ 0.42
NPHP4-209ENST00000489180 CUZD1Q86UP6 607 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 CHID1Q9BWS9 393 aa17.69■□□□□ 0.42
NPHP4-209ENST00000489180 BCL9O00512 1426 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 CAPN8A6NHC0 703 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 SLC28A1O00337 649 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 ROR2Q01974 943 aaKnown RBP17.68■□□□□ 0.42
NPHP4-209ENST00000489180 AKIRIN2Q53H80 203 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 CLNKQ7Z7G1 428 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 RTL3Q8N8U3 475 aaKnown RBP17.68■□□□□ 0.42
NPHP4-209ENST00000489180 S100A14Q9HCY8 104 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 CRNNQ9UBG3 495 aaPredicted RBP17.68■□□□□ 0.42
NPHP4-209ENST00000489180 UXTQ9UBK9 157 aaPredicted RBP17.68■□□□□ 0.42
NPHP4-209ENST00000489180 CLUHO75153 1309 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 MATKP42679 507 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 PEX6Q13608 980 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 TIGD2Q4W5G0 525 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 VWA5B1Q5TIE3 1220 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 MZT2BQ6NZ67 158 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 MZT2AQ6P582 158 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 AMER2Q8N7J2 671 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 PANX1Q96RD7 426 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 DNMT3LQ9UJW3 386 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 PLLPQ9Y342 182 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 LRRIQ1Q96JM4 1722 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 CHURC1-FNTBB4DL54 471 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 CCDC182A6NF36 153 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 WFS1O76024 890 aa17.68■□□□□ 0.42
NPHP4-209ENST00000489180 SPPL2CQ8IUH8 684 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms