RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 TMCO4Q5TGY1 634 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 MACC1Q6ZN28 852 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 FAM181AQ8N9Y4 354 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 BTN2A2Q8WVV5 523 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 TEKT4Q8WW24 435 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 ZNF599Q96NL3 588 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 TCEAL2Q9H3H9 227 aaPredicted RBP23.18■■□□□ 1.3
COL9A3-213ENST00000489045 PCDH18Q9HCL0 1135 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 SEPT3Q9UH03 358 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 APOBEC3BQ9UH17 382 aaKnown RBP23.18■■□□□ 1.3
COL9A3-213ENST00000489045 PNMA8BQ9ULN7 279 aaPredicted RBP23.18■■□□□ 1.3
COL9A3-213ENST00000489045 U3KQA8 63 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 TOR1BO14657 336 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 SCNN1BP51168 640 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 WSCD2Q2TBF2 565 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 DEFB133Q30KQ1 61 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 ZCCHC8Q6NZY4 707 aaKnown RBP23.17■■□□□ 1.3
COL9A3-213ENST00000489045 PHACTR4Q8IZ21 702 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 PAF1Q8N7H5 531 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 ECHDC3Q96DC8 303 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 NSMCE3Q96MG7 304 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 PSKH2Q96QS6 385 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 SPASTQ9UBP0 616 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 CLCA2Q9UQC9 943 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 GPSM3Q9Y4H4 160 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 CELSR3Q9NYQ7 3312 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 NBEAQ8NFP9 2946 aa23.17■■□□□ 1.3
COL9A3-213ENST00000489045 DUSP3P51452 185 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-213ENST00000489045 RENBPP51606 427 aa23.16■■□□□ 1.3
COL9A3-213ENST00000489045 AP1S1P61966 158 aa23.16■■□□□ 1.3
COL9A3-213ENST00000489045 ZNF235Q14590 738 aa23.16■■□□□ 1.3
COL9A3-213ENST00000489045 LRRC61Q9BV99 259 aa23.16■■□□□ 1.3
COL9A3-213ENST00000489045 USP29Q9HBJ7 922 aa23.16■■□□□ 1.3
COL9A3-213ENST00000489045 EVA1BQ9NVM1 165 aa23.16■■□□□ 1.3
COL9A3-213ENST00000489045 NENFQ9UMX5 172 aa23.16■■□□□ 1.3
COL9A3-213ENST00000489045 LHX6Q9UPM6 363 aa23.16■■□□□ 1.3
COL9A3-213ENST00000489045 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.16■■□□□ 1.3
COL9A3-213ENST00000489045 URB1O60287 2271 aaKnown RBP23.16■■□□□ 1.3
COL9A3-213ENST00000489045 ASXL3Q9C0F0 2248 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 TTC24A2A3L6 582 aaPredicted RBP23.15■■□□□ 1.3
COL9A3-213ENST00000489045 MYO1FO00160 1098 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 LZTS3O60299 673 aaPredicted RBP23.15■■□□□ 1.3
COL9A3-213ENST00000489045 GCATO75600 419 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 PEX11BO96011 259 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 TPM3P06753 285 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 SSR1P43307 286 aaKnown RBP23.15■■□□□ 1.3
COL9A3-213ENST00000489045 RALGDSQ12967 914 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 KRT81Q14533 505 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 AGERQ15109 404 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 PRRT3Q5FWE3 981 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 C19orf48Q6RUI8 117 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 CACTIN-AS1Q8N1I8 211 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 DCBLD1Q8N8Z6 715 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 ZNF564Q8TBZ8 553 aaPredicted RBP23.15■■□□□ 1.3
COL9A3-213ENST00000489045 SLC13A1Q9BZW2 595 aa23.15■■□□□ 1.3
COL9A3-213ENST00000489045 COL27A1Q8IZC6 1860 aaPredicted RBP23.14■■□□□ 1.29
COL9A3-213ENST00000489045 TRAFD1O14545 582 aaPredicted RBP23.14■■□□□ 1.29
COL9A3-213ENST00000489045 OPA1O60313 960 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 MAFKO60675 156 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 MT-CO3P00414 261 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 PCCBP05166 539 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 GP1BAP07359 652 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 SERPINB6P35237 376 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 CDH6P55285 790 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 PPARDQ03181 441 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 C1orf61Q13536 156 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 FAXCQ5TGI0 409 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 ATPAF2Q8N5M1 289 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 IFI44Q8TCB0 444 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 TBATAQ96M53 351 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 IL12RB2Q99665 862 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 NRSN2Q9GZP1 204 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 SALL4Q9UJQ4 1053 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 AK5Q9Y6K8 562 aa23.14■■□□□ 1.29
COL9A3-213ENST00000489045 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-213ENST00000489045 TPP1O14773 563 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 CD48P09326 243 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 ELFN1P0C7U0 828 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 HNRNPH3P31942 346 aaKnown RBP23.13■■□□□ 1.29
COL9A3-213ENST00000489045 HSPA9P38646 679 aaKnown RBP23.13■■□□□ 1.29
COL9A3-213ENST00000489045 PEX5P50542 639 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 ADKP55263 362 aaKnown RBP23.13■■□□□ 1.29
COL9A3-213ENST00000489045 POLR2LP62875 67 aaKnown RBP23.13■■□□□ 1.29
COL9A3-213ENST00000489045 MMRN1Q13201 1228 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 INPP5AQ14642 412 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 CDKN3Q16667 212 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 SKOR2Q2VWA4 1001 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-213ENST00000489045 DPPA4Q7L190 304 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 CPNE8Q86YQ8 564 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 PGBD5Q8N414 524 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 APOOQ9BUR5 198 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 NCKIPSDQ9NZQ3 722 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 RCOR3Q9P2K3 495 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-213ENST00000489045 OR1A2Q9Y585 309 aa23.13■■□□□ 1.29
COL9A3-213ENST00000489045 CFAP69A5D8W1 941 aa23.12■■□□□ 1.29
COL9A3-213ENST00000489045 TMEM110-MUSTN1A8MSY1 372 aa23.12■■□□□ 1.29
COL9A3-213ENST00000489045 TSHRP16473 764 aa23.12■■□□□ 1.29
COL9A3-213ENST00000489045 CR2P20023 1033 aa23.12■■□□□ 1.29
COL9A3-213ENST00000489045 IL4RP24394 825 aa23.12■■□□□ 1.29
COL9A3-213ENST00000489045 GJC1P36383 396 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms