RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	HSPH1	Q92598	858 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	RPRD1A	Q96P16	312 aa	Predicted RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	OMD	Q99983	421 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	NRSN2	Q9GZP1	204 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	OSBPL2	Q9H1P3	480 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	RSPH9	Q9H1X1	276 aa	Predicted RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	SUV39H2	Q9H5I1	410 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	DHX35	Q9H5Z1	703 aa	Known RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	FBRS	Q9HAH7	460 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	TRMT1	Q9NXH9	659 aa	Known RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	ARHGEF38	Q9NXL2	777 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	DDX56	Q9NY93	547 aa	Known RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	NOP53	Q9NZM5	478 aa	Known RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	FZD10	Q9ULW2	581 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	ALG6	Q9Y672	507 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	DUSP10	Q9Y6W6	482 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	UNC13C	Q8NB66	2214 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	SCN8A	Q9UQD0	1980 aa		8.9	□□□□□ -0.99
USP4-213	ENST00000488520	LRRC72	A6NJI9	287 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	CYSRT1	A8MQ03	144 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	PYCARD-AS1	I3L0S3	204 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	CREB3	O43889	395 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	KIF5C	O60282	957 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	BUB1B	O60566	1050 aa	Predicted RBP	8.89	□□□□□ -0.99
USP4-213	ENST00000488520	RNASEH1	O60930	286 aa	Known RBP	8.89	□□□□□ -0.99
USP4-213	ENST00000488520	MOCS3	O95396	460 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	IGLV3-27	P01718	113 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	C1S	P09871	688 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	TFE3	P19532	575 aa	Predicted RBP	8.89	□□□□□ -0.99
USP4-213	ENST00000488520	COMT	P21964	271 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	GLDC	P23378	1020 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	COL8A1	P27658	744 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	SLC6A4	P31645	630 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	SLC8A1	P32418	973 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	CSK	P41240	450 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	PSMD8	P48556	350 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	OXCT1	P55809	520 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	HDAC4	P56524	1084 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	OGDH	Q02218	1023 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	CFHR1	Q03591	330 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	AUH	Q13825	339 aa	Known RBP	8.89	□□□□□ -0.99
USP4-213	ENST00000488520	RTP5	Q14D33	572 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	CST6	Q15828	149 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	MS4A13	Q5J8X5	152 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	PIK3R6	Q5UE93	754 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	TTC39B	Q5VTQ0	682 aa	Predicted RBP	8.89	□□□□□ -0.99
USP4-213	ENST00000488520	KDM7A	Q6ZMT4	941 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	USP30	Q70CQ3	517 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	PEX26	Q7Z412	305 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	MFN1	Q8IWA4	741 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	CARNMT1	Q8N4J0	409 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	8.89	□□□□□ -0.99
USP4-213	ENST00000488520	HJURP	Q8NCD3	748 aa	Predicted RBP	8.89	□□□□□ -0.99
USP4-213	ENST00000488520	TRIM58	Q8NG06	486 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	OR14C36	Q8NHC7	312 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	FGF11	Q92914	225 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	NTAN1	Q96AB6	310 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	SKA1	Q96BD8	255 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	IFT43	Q96FT9	208 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	SERAC1	Q96JX3	654 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	GSX2	Q9BZM3	304 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	TRIM7	Q9C029	511 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	LACRT	Q9GZZ8	138 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	RETREG1	Q9H6L5	497 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	CATSPERB	Q9H7T0	1116 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	GDF3	Q9NR23	364 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	VANGL2	Q9ULK5	521 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	TFR2	Q9UP52	801 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	AP4E1	Q9UPM8	1137 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	REXO2	Q9Y3B8	237 aa	Known RBP	8.89	□□□□□ -0.99
USP4-213	ENST00000488520	HS3ST4	Q9Y661	456 aa		8.89	□□□□□ -0.99
USP4-213	ENST00000488520	MAST4	O15021	2626 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TBC1D3D	A0A087WVF3	549 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TBC1D3I	A0A087WXS9	549 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TBC1D3E	A0A087X179	549 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TBC1D3K	A0A087X1G2	549 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TEX51	A0A1B0GUA7	166 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520		A0A1W2PR77	199 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TBC1D3F	A6NER0	549 aa	Predicted RBP	8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TTC34	A8MYJ7	566 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TBC1D3L	B9A6J9	549 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520		H3BRJ5	948 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TLR4	O00206	839 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	EEF2K	O00418	725 aa	Known RBP	8.88	□□□□□ -0.99
USP4-213	ENST00000488520	SDC3	O75056	442 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	LRCH4	O75427	683 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	CLDN11	O75508	207 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	PALM	O75781	387 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	ZRANB2	O95218	330 aa	Known RBP eCLIP	8.88	□□□□□ -0.99
USP4-213	ENST00000488520	IGHA1	P01876	353 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TBC1D3H	P0C7X1	549 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	GRN	P28799	593 aa	Known RBP	8.88	□□□□□ -0.99
USP4-213	ENST00000488520	EPHA8	P29322	1005 aa	Predicted RBP	8.88	□□□□□ -0.99
USP4-213	ENST00000488520	MAT2A	P31153	395 aa	Known RBP	8.88	□□□□□ -0.99
USP4-213	ENST00000488520	L1CAM	P32004	1257 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	HTR7	P34969	479 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	ARRB1	P49407	418 aa	Predicted RBP	8.88	□□□□□ -0.99
USP4-213	ENST00000488520	TPI1	P60174	286 aa		8.88	□□□□□ -0.99
USP4-213	ENST00000488520	EIF4EBP2	Q13542	120 aa	Predicted RBP	8.88	□□□□□ -0.99
USP4-213	ENST00000488520	PDK2	Q15119	407 aa		8.88	□□□□□ -0.99

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms