RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 ADCY4Q8NFM4 1077 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 USP7Q93009 1102 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 MYDGFQ969H8 173 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 REXO5Q96IC2 774 aaKnown RBP16.53■□□□□ 0.24
COL7A1-210ENST00000487017 CPXM1Q96SM3 734 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 C2orf49Q9BVC5 232 aaPredicted RBP16.53■□□□□ 0.24
COL7A1-210ENST00000487017 SSU72Q9NP77 194 aaKnown RBP16.53■□□□□ 0.24
COL7A1-210ENST00000487017 C2orf71A6NGG8 1288 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 VAV1P15498 845 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 PTGIRP43119 386 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 GSTM5P46439 218 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 PSEN1P49768 467 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 TAB1Q15750 504 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 GPR107Q5VW38 600 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 EIF3MQ7L2H7 374 aaKnown RBP16.53■□□□□ 0.24
COL7A1-210ENST00000487017 CUZD1Q86UP6 607 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 AMER2Q8N7J2 671 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 ZNF540Q8NDQ6 660 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 TRMOQ9BU70 441 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 DNMT3LQ9UJW3 386 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 SEC24AO95486 1093 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 ATN1P54259 1190 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-210ENST00000487017 TRIM32Q13049 653 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 SCIMPQ6UWF3 145 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 ADAMTSL2Q86TH1 951 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 TOP6BLQ8N6T0 577 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 NELL1Q92832 810 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 VWA7Q9Y334 891 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 CLDN5O00501 218 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 B4GALT4O60513 344 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 MAGEC1O60732 1142 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 ETS2P15036 469 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 MPSTP25325 297 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 ARMC3Q5W041 872 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 DGCR14Q96DF8 476 aaKnown RBP16.52■□□□□ 0.24
COL7A1-210ENST00000487017 QRFPRQ96P65 431 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 COQ7Q99807 217 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 BPIFA1Q9NP55 256 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 CRNNQ9UBG3 495 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-210ENST00000487017 IKZF3Q9UKT9 509 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 CORO2BQ9UQ03 480 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 BTBD3Q9Y2F9 522 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 TRAF6Q9Y4K3 522 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 SF3B1O75533 1304 aaKnown RBP eCLIP16.52■□□□□ 0.24
COL7A1-210ENST00000487017 NTRK1P04629 796 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 GJB1P08034 283 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 GTF2E2P29084 291 aaKnown RBP16.52■□□□□ 0.24
COL7A1-210ENST00000487017 HSPA14Q0VDF9 509 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 CYP20A1Q6UW02 462 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 OSBPL6Q9BZF3 934 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 EPB41L1Q9H4G0 881 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 ZDHHC6Q9H6R6 413 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 MRPL39Q9NYK5 338 aaKnown RBP16.52■□□□□ 0.24
COL7A1-210ENST00000487017 GSTK1Q9Y2Q3 226 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 DERAQ9Y315 318 aa16.52■□□□□ 0.24
COL7A1-210ENST00000487017 BCL9LQ86UU0 1499 aa16.52■□□□□ 0.23
COL7A1-210ENST00000487017 USP46P62068 366 aa16.52■□□□□ 0.23
COL7A1-210ENST00000487017 SETMARQ53H47 684 aaPredicted RBP16.52■□□□□ 0.23
COL7A1-210ENST00000487017 CERCAMQ5T4B2 595 aa16.52■□□□□ 0.23
COL7A1-210ENST00000487017 LCLAT1Q6UWP7 414 aa16.52■□□□□ 0.23
COL7A1-210ENST00000487017 ABHD15Q6UXT9 468 aa16.52■□□□□ 0.23
COL7A1-210ENST00000487017 ATL1Q8WXF7 558 aa16.52■□□□□ 0.23
COL7A1-210ENST00000487017 CSPG4P5Q96PW8 444 aa16.52■□□□□ 0.23
COL7A1-210ENST00000487017 HOPXQ9BPY8 73 aaPredicted RBP16.52■□□□□ 0.23
COL7A1-210ENST00000487017 TINF2Q9BSI4 451 aa16.52■□□□□ 0.23
COL7A1-210ENST00000487017 FECHP22830 423 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 MAXP61244 160 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 C16orf62Q7Z3J2 963 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 NETO2Q8NC67 525 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 ELMO1Q92556 727 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 POP5Q969H6 163 aaKnown RBP16.51■□□□□ 0.23
COL7A1-210ENST00000487017 HDAC10Q969S8 669 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 RCOR3Q9P2K3 495 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-210ENST00000487017 CDH22Q9UJ99 828 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 ANKRD26Q9UPS8 1709 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 SGTAO43765 313 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 C2P06681 752 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 FASTKD3Q14CZ7 662 aaKnown RBP16.51■□□□□ 0.23
COL7A1-210ENST00000487017 RNASEH2BQ5TBB1 312 aaKnown RBP16.51■□□□□ 0.23
COL7A1-210ENST00000487017 ST13P5Q8NFI4 369 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-210ENST00000487017 OR4L1Q8NH43 312 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 NKX2-3Q8TAU0 364 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 TSPAN18Q96SJ8 248 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 GORASP1Q9BQQ3 440 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 WDR55Q9H6Y2 383 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-210ENST00000487017 EGFL7Q9UHF1 273 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 ZNF180Q9UJW8 692 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 NRP2O60462 931 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 LRCH4O75427 683 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 MRPS6P82932 125 aaKnown RBP16.51■□□□□ 0.23
COL7A1-210ENST00000487017 STX4Q12846 297 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 LYPLAL1Q5VWZ2 237 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 CLN6Q9NWW5 311 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 SLC12A4Q9UP95 1085 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 AGRPO00253 132 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 DNM1LO00429 736 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 ZNF37AP17032 561 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-210ENST00000487017 MAPK8P45983 427 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 CACUL1Q86Y37 369 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 HPS6Q86YV9 775 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms