RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 MED30Q96HR3 178 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 MXRA8Q9BRK3 442 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 VEZTQ9HBM0 779 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 CD93Q9NPY3 652 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 SMYD2Q9NRG4 433 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 C20orf141Q9NUB4 165 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 OR6C3Q9NZP0 311 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 KCND2Q9NZV8 630 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 MPP6Q9NZW5 540 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 CFAP43Q8NDM7 1665 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 TEX13CA0A0J9YWL9 993 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 DYTNA2CJ06 578 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 WNT9BO14905 357 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 TIMM23O14925 209 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 KLK8O60259 260 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 KCNJ13O60928 360 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 SERPINI2O75830 405 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 MTA2O94776 668 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 RGS11O94810 467 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 F9P00740 461 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 PLA2G2AP14555 144 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 ITGAXP20702 1163 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 C21orf33P30042 268 aaPredicted RBP6.12□□□□□ -1.43
USP40-213ENST00000483216 ARL1P40616 181 aaPredicted RBP6.12□□□□□ -1.43
USP40-213ENST00000483216 PAFAH1B1P43034 410 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 EFNA5P52803 228 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 DSCR9P59020 149 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 PTP4A2Q12974 167 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 TRAF3Q13114 568 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 GAPVD1Q14C86 1478 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 ARHGEF6Q15052 776 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 PLCB4Q15147 1175 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 HIST2H2ACQ16777 129 aaPredicted RBP6.12□□□□□ -1.43
USP40-213ENST00000483216 ALFQ53S48 1182 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 TXNDC8Q6A555 127 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 KIAA1161Q6NSJ0 714 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 CPLX2Q6PUV4 134 aaKnown RBP6.12□□□□□ -1.43
USP40-213ENST00000483216 KLHL24Q6TFL4 600 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 NEK10Q6ZWH5 1172 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 FJX1Q86VR8 437 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 HEATR4Q86WZ0 1026 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 ARRDC2Q8TBH0 407 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 TXNDC15Q96J42 360 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 MPHOSPH8Q99549 860 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 PAIP1Q9H074 479 aaKnown RBP6.12□□□□□ -1.43
USP40-213ENST00000483216 UBN1Q9NPG3 1134 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 ZNF580Q9UK33 172 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 PAM16Q9Y3D7 125 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 NFE2L3Q9Y4A8 694 aa6.12□□□□□ -1.43
USP40-213ENST00000483216 PCF11O94913 1555 aaKnown RBP6.11□□□□□ -1.43
USP40-213ENST00000483216 GRIN2BQ13224 1484 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 J3KR12 359 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 NDUFB4O95168 129 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 EDN2P20800 178 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 ABCD3P28288 659 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 CHATP28329 748 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 CCKBRP32239 447 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 RPL3P39023 403 aaKnown RBP6.11□□□□□ -1.43
USP40-213ENST00000483216 SEC61A1P61619 476 aaKnown RBP6.11□□□□□ -1.43
USP40-213ENST00000483216 HLFQ16534 295 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 INTS11Q5TA45 600 aaKnown RBP6.11□□□□□ -1.43
USP40-213ENST00000483216 TYW3Q6IPR3 259 aaKnown RBP6.11□□□□□ -1.43
USP40-213ENST00000483216 NFKBIDQ8NI38 313 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 NUDCD2Q8WVJ2 157 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 LRFN5Q96NI6 719 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 MMTAG2Q9BU76 263 aaKnown RBP6.11□□□□□ -1.43
USP40-213ENST00000483216 HEMGNQ9BXL5 484 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 AGXT2Q9BYV1 514 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 NUF2Q9BZD4 464 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 ARHGAP26Q9UNA1 814 aa6.11□□□□□ -1.43
USP40-213ENST00000483216 FYCO1Q9BQS8 1478 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 CCNB3Q8WWL7 1395 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 IGLV5-52A0A0A0MRZ9 124 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 A0A0U1RQJ8 604 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 A0A1W2PQM1 296 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 CCDC189A1A4V9 331 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 A6NLC8 198 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 C4orf47A7E2U8 309 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 GTPBP1O00178 669 aaKnown RBP6.1□□□□□ -1.43
USP40-213ENST00000483216 AGR2O95994 175 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 MT-CYBP00156 380 aaPredicted RBP6.1□□□□□ -1.43
USP40-213ENST00000483216 IRF1P10914 325 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 FCGR1AP12314 374 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 ZNF12P17014 697 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 BNC1Q01954 994 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 KEAP1Q14145 624 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 RNPS1Q15287 305 aaKnown RBP6.1□□□□□ -1.43
USP40-213ENST00000483216 SLC9B1Q4ZJI4 515 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 ZNF585BQ52M93 769 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 FAM69AQ5T7M9 428 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 MMS22LQ6ZRQ5 1243 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 SHFQ7M4L6 423 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 RBM23Q86U06 439 aaKnown RBP6.1□□□□□ -1.43
USP40-213ENST00000483216 ADAMTS15Q8TE58 950 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 KIF1BPQ96EK5 621 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 KLHL15Q96M94 604 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 SIN3AQ96ST3 1273 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 EIF2AK1Q9BQI3 630 aaKnown RBP6.1□□□□□ -1.43
USP40-213ENST00000483216 TM6SF1Q9BZW5 370 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 JMJD4Q9H9V9 463 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms