RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ST13P50502 369 aaKnown RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 MAPK15Q8TD08 544 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 MTFMTQ96DP5 389 aaKnown RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 RPL10LQ96L21 214 aaKnown RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 DEPDC7Q96QD5 511 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 FTHL17Q9BXU8 183 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 TRMT6Q9UJA5 497 aaKnown RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 MOXD2PA6NHM9 499 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 SNAP91O60641 907 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 CPSF4O95639 269 aaKnown RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 LTA4HP09960 611 aaKnown RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 FUT4P22083 530 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 ADAM17P78536 824 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 ZNF252P-AS1Q0IIN9 211 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 ZNF280DQ6N043 979 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 FAM35AQ86V20 835 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 SLC22A9Q8IVM8 553 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 TBL1YQ9BQ87 522 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 CHID1Q9BWS9 393 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 RHOJQ9H4E5 214 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 UBQLN1Q9UMX0 589 aaKnown RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 GPR25O00155 361 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 SNPHO15079 494 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 NOBOXO60393 691 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 GLP2RO95838 553 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 FTH1P02794 183 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 AKT1P31749 480 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 ETV4P43268 484 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 RPS9P46781 194 aaKnown RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 MS4A2Q01362 244 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 TRAF3Q13114 568 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 MAPRE1Q15691 268 aaKnown RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 MGAT5BQ3V5L5 792 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 SMYD1Q8NB12 490 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 CHST13Q8NET6 341 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 C1orf21Q9H246 121 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 TLE6Q9H808 572 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 ARHGEF4Q9NR80 690 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 ABI2Q9NYB9 513 aaPredicted RBP13.59□□□□□ -0.23
USP42-206ENST00000479544 CPA4Q9UI42 421 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 SLC30A1Q9Y6M5 507 aa13.59□□□□□ -0.23
USP42-206ENST00000479544 PLIN4Q96Q06 1357 aa13.58□□□□□ -0.23
USP42-206ENST00000479544 SF3B1O75533 1304 aaKnown RBP eCLIP13.58□□□□□ -0.231e-7■■■■■ 74.2
USP42-206ENST00000479544 MICAL3Q7RTP6 2002 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 CST1P01037 141 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 CDK4P11802 303 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 IKBKEQ14164 716 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 IL27RAQ6UWB1 636 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 OR9Q1Q8NGQ5 310 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 C18orf25Q96B23 403 aaPredicted RBP13.58□□□□□ -0.24
USP42-206ENST00000479544 ZHX1-C8orf76Q96EF9 292 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 TPD52L3Q96J77 140 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 MAGED4Q96JG8 741 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 MRPL57Q9BQC6 102 aaKnown RBP13.58□□□□□ -0.24
USP42-206ENST00000479544 CATSPERBQ9H7T0 1116 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 AMBNQ9NP70 447 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 ITM2CQ9NQX7 267 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 SFMBT1Q9UHJ3 866 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 URB1O60287 2271 aaKnown RBP13.58□□□□□ -0.24
USP42-206ENST00000479544 C10orf71Q711Q0 1435 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 HACD1B0YJ81 288 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 H3BNX3 289 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 CD4P01730 458 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 DPYSQ14117 519 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 INSCQ1MX18 579 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 CTC1Q2NKJ3 1217 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 GPR158Q5T848 1215 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 EID3Q8N140 333 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 ZNF540Q8NDQ6 660 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 WNT8BQ93098 351 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 HGH1Q9BTY7 390 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 MIR1-1HGQ9H1L0 117 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 LHX5Q9H2C1 402 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 EPS8L2Q9H6S3 715 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 SMPD3Q9NY59 655 aaPredicted RBP13.58□□□□□ -0.24
USP42-206ENST00000479544 CNOT6Q9ULM6 557 aaKnown RBP13.58□□□□□ -0.24
USP42-206ENST00000479544 PHF24Q9UPV7 400 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 GPC6Q9Y625 555 aaPredicted RBP13.58□□□□□ -0.24
USP42-206ENST00000479544 SQORQ9Y6N5 450 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 H0Y858 1186 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 HCRTO43612 131 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 CILPO75339 1184 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 RSL1D1O76021 490 aaKnown RBP13.58□□□□□ -0.24
USP42-206ENST00000479544 TPSB2P20231 275 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 TPSAB1Q15661 275 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 FBXL19Q6PCT2 694 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 ABHD15Q6UXT9 468 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 CENPSQ8N2Z9 138 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 HDAC10Q969S8 669 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 CITED4Q96RK1 184 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 FEM1AQ9BSK4 669 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 AP5M1Q9H0R1 490 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 ASB7Q9H672 318 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 USP29Q9HBJ7 922 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 DDX43Q9NXZ2 648 aaKnown RBP13.58□□□□□ -0.24
USP42-206ENST00000479544 NENFQ9UMX5 172 aa13.58□□□□□ -0.24
USP42-206ENST00000479544 CASTOR2A6NHX0 329 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 FAM159BA6NKW6 160 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 RECQL5O94762 991 aaPredicted RBP13.57□□□□□ -0.24
USP42-206ENST00000479544 GGT5P36269 586 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms