RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 KDM7AQ6ZMT4 941 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 DBX2Q6ZNG2 339 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 ABI3BPQ7Z7G0 1075 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 CCDC13Q8IYE1 715 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 SETD7Q8WTS6 366 aaKnown RBP15.7■□□□□ 0.1
HMGA1-206ENST00000478214 PDCD6IPQ8WUM4 868 aaKnown RBP15.7■□□□□ 0.1
HMGA1-206ENST00000478214 LENG8Q96PV6 779 aaPredicted RBP15.7■□□□□ 0.1
HMGA1-206ENST00000478214 SEMA3CQ99985 751 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 POLR1EQ9GZS1 481 aaKnown RBP15.7■□□□□ 0.1
HMGA1-206ENST00000478214 TRIM10Q9UDY6 481 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 COQ6Q9Y2Z9 468 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 SPAARA0A1B0GVQ0 90 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 A6NNZ2 444 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 JCHAINP01591 159 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 HLA-DQB2P05538 268 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 C6P13671 934 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 LIG3P49916 1009 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 GSDMDP57764 484 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 POLR2LP62875 67 aaKnown RBP15.69■□□□□ 0.1
HMGA1-206ENST00000478214 FOXK2Q01167 660 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 DSC2Q02487 901 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 ADCY2Q08462 1091 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 PPIDQ08752 370 aaKnown RBP15.69■□□□□ 0.1
HMGA1-206ENST00000478214 TFDP2Q14188 446 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 PDK1Q15118 436 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 Q6ZSR6 202 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 B4GALNT4Q76KP1 1039 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 PTAR1Q7Z6K3 402 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-206ENST00000478214 GATAD2AQ86YP4 633 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 RCOR2Q8IZ40 523 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 SLC22A18ASQ8N1D0 253 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 EXD1Q8NHP7 514 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 KIAA1524Q8TCG1 905 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 CENPTQ96BT3 561 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 CALR3Q96L12 384 aaKnown RBP15.69■□□□□ 0.1
HMGA1-206ENST00000478214 OLFM3Q96PB7 478 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 ERVMER34-1Q9H9K5 563 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 SAE1Q9UBE0 346 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-206ENST00000478214 PCOLCE2Q9UKZ9 415 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 BTBD3Q9Y2F9 522 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.69■□□□□ 0.1
HMGA1-206ENST00000478214 TTLL3Q9Y4R7 772 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 PCDHB9Q9Y5E1 797 aa15.69■□□□□ 0.1
HMGA1-206ENST00000478214 hCG_1818297A0A087WSY0 165 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 MACROD2A1Z1Q3 448 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 GRID2IPA4D2P6 1211 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 FPGTO14772 594 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 FLRT2O43155 660 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 PCDHGA12O60330 932 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 CST8O60676 142 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 CBFA2T3O75081 653 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 NEBLO76041 1014 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 CPP00450 1065 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 ADRB1P08588 477 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 CTNNA1P35221 906 aaKnown RBP15.68■□□□□ 0.1
HMGA1-206ENST00000478214 RXRGP48443 463 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 SIM1P81133 766 aaPredicted RBP15.68■□□□□ 0.1
HMGA1-206ENST00000478214 NIPAL4Q0D2K0 466 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 AP1B1Q10567 949 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 KIF5AQ12840 1032 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 RALGDSQ12967 914 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 BNIP3Q12983 259 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 ZBTB17Q13105 803 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 IHHQ14623 411 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 SUZ12Q15022 739 aaKnown RBP15.68■□□□□ 0.1
HMGA1-206ENST00000478214 TFDP3Q5H9I0 405 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 ALG1LQ6GMV1 187 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 KYAT3Q6YP21 454 aaKnown RBP15.68■□□□□ 0.1
HMGA1-206ENST00000478214 CCDC50Q8IVM0 306 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 OXR1Q8N573 874 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 LRRC57Q8N9N7 239 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 DENND6BQ8NEG7 585 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 SPOCK2Q92563 424 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 RBM41Q96IZ5 413 aaKnown RBP15.68■□□□□ 0.1
HMGA1-206ENST00000478214 CAAP1Q9H8G2 361 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 MBNL1Q9NR56 388 aaKnown RBP15.68■□□□□ 0.1
HMGA1-206ENST00000478214 AMACRQ9UHK6 382 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 PCDHA3Q9Y5H8 950 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 RAI2Q9Y5P3 530 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 PCNX2A6NKB5 2137 aa15.68■□□□□ 0.1
HMGA1-206ENST00000478214 SHROOM3Q8TF72 1996 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 A0A1W2PQ67 120 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 A8MX80 341 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 PPP1R12AO14974 1030 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-206ENST00000478214 LZTS3O60299 673 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-206ENST00000478214 PGLSO95336 258 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 PECAM1P16284 738 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-206ENST00000478214 EPHA8P29322 1005 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-206ENST00000478214 IGFALSP35858 605 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 RABIFP47224 123 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 NR2C2P49116 596 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 ARRB1P49407 418 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-206ENST00000478214 IFI35P80217 286 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-206ENST00000478214 PTPRRQ15256 657 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 TPRG1LQ5T0D9 272 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 ARMC12Q5T9G4 340 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 LIPIQ6XZB0 460 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 DPPA4Q7L190 304 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 TXLNBQ8N3L3 684 aa15.67■□□□□ 0.1
HMGA1-206ENST00000478214 CNTD1Q8N815 330 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms