RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 B4GALT4O60513 344 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 SERPINA6P08185 405 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 THRAP10827 490 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 HGFP14210 728 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 CCNB1P14635 433 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ZNF37AP17032 561 aaPredicted RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ITGAXP20702 1163 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PSEN2P49810 448 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ACLYP53396 1101 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PSME3P61289 254 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ITGADQ13349 1161 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 NR6A1Q15406 480 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 NADK2Q4G0N4 442 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 DUSP28Q4G0W2 176 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 LIN52Q52LA3 116 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 NEPROQ6NW34 567 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 TPGS1Q6ZTW0 290 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ARMCX6Q7L4S7 300 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ARHGAP22Q7Z5H3 698 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ZC3H3Q8IXZ2 948 aaKnown RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 UBE2J2Q8N2K1 259 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 DBF4BQ8NFT6 615 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 FAM110BQ8TC76 370 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 LPGAT1Q92604 370 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PCED1BQ96HM7 432 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ITCHQ96J02 903 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 NSUN5Q96P11 429 aaKnown RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ZBED2Q9BTP6 218 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 RUBCNLQ9H714 662 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 COQ10BQ9H8M1 238 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 UBQLN1Q9UMX0 589 aaKnown RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PKP3Q9Y446 797 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 MAFBQ9Y5Q3 323 aaPredicted RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 RTTNQ86VV8 2226 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 SMIM30A4D0T7 59 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 KRT87PA6NCN2 255 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 UBXN8O00124 270 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PSMD12O00232 456 aaPredicted RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 CHADO15335 359 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 B4GAT1O43505 415 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 CCNT2O60583 730 aaKnown RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 TSPAN1O60635 241 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 NBNO60934 754 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 CPSF4O95639 269 aaKnown RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 FAM58BPP0C7Q3 252 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PAMP19021 973 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 OR1E1P30953 314 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 L1CAMP32004 1257 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 STT3AP46977 705 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 IST1P53990 364 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PTP4A2Q12974 167 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PGS1Q32NB8 556 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 TEDDM1Q5T9Z0 273 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 NCBP2-AS2Q69YL0 99 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 NAPEPLDQ6IQ20 393 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 FAM180BQ6P0A1 224 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 CBR4Q8N4T8 237 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 DNAJC5GQ8N7S2 189 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 OR13C4Q8NGS5 318 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 OLIG1Q8TAK6 271 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 DENND1AQ8TEH3 1009 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 HEXDCQ8WVB3 486 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ZNF560Q96MR9 790 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 MYOCQ99972 504 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 POLR1BQ9H9Y6 1135 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 KCNK13Q9HB14 408 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 RASSF1Q9NS23 344 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 TMEM39AQ9NV64 488 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 UXTQ9UBK9 157 aaPredicted RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 IPO11Q9UI26 975 aaKnown RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PCDHGC4Q9Y5F7 938 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 DNAJC13O75165 2243 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 DDHD2O94830 711 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 THP07101 528 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 HSPA8P11142 646 aaKnown RBP5.01□□□□□ -1.61
CCDC39-204ENST00000476379 NPR3P17342 541 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 PRKACGP22612 351 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 HMOX2P30519 316 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 TM4SF4P48230 202 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 CHN2P52757 468 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 AP3M2P53677 418 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 ARHGEF7Q14155 803 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 PCLAFQ15004 111 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 RABL3Q5HYI8 236 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 CES4AQ5XG92 561 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 SLC27A1Q6PCB7 646 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 MTHFD1LQ6UB35 978 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 C16orf89Q6UX73 402 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 ASRGL1Q7L266 308 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 HERC6Q8IVU3 1022 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 PQLC1Q8N2U9 271 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 MYLPFQ96A32 169 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 RNF31Q96EP0 1072 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 FBXL20Q96IG2 436 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 MAGED4Q96JG8 741 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 FCRL2Q96LA5 508 aaPredicted RBP5.01□□□□□ -1.61
CCDC39-204ENST00000476379 SEMA3CQ99985 751 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 C16orf70Q9BSU1 422 aa5.01□□□□□ -1.61
CCDC39-204ENST00000476379 PDP2Q9P2J9 529 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms