RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CEP44Q9C0F1 390 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 CXXC4Q9H2H0 198 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 ACTL8Q9H568 366 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 PADI1Q9ULC6 663 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 ACANP16112 2415 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 GOLGA6L3A6NEY3 463 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 YJEFN3A6XGL0 299 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 E7ENQ6 273 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 CACNB4O00305 520 aaPredicted RBP8.1□□□□□ -1.11
USP54-211ENST00000474929 PDE2AO00408 941 aaPredicted RBP8.1□□□□□ -1.11
USP54-211ENST00000474929 SART1O43290 800 aaKnown RBP8.1□□□□□ -1.11
USP54-211ENST00000474929 F9P00740 461 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 ASS1P00966 412 aaKnown RBP8.1□□□□□ -1.11
USP54-211ENST00000474929 LTFP02788 710 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 SETSIPP0DME0 302 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 AGAP20933 346 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 PIK3CAP42336 1068 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 SUOXP51687 545 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 MAZP56270 477 aaKnown RBP8.1□□□□□ -1.11
USP54-211ENST00000474929 DAOAP59103 153 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 KIAA1024LP59773 190 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 RPS15P62841 145 aaKnown RBP8.1□□□□□ -1.11
USP54-211ENST00000474929 CLDN10P78369 228 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 MTM1Q13496 603 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 IL11RAQ14626 422 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 IRF4Q15306 451 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 TCEA2Q15560 299 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 ASIC2Q16515 512 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 RAP1GAP2Q684P5 730 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 MED25Q71SY5 747 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 SV2BQ7L1I2 683 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 ARHGAP22Q7Z5H3 698 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 CEP97Q8IW35 865 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 CCDC65Q8IXS2 484 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 NECAB1Q8N987 351 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 FAM184AQ8NB25 1140 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 FDCSPQ8NFU4 85 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 ZDHHC1Q8WTX9 485 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 OSBPL1AQ9BXW6 950 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 NIF3L1Q9GZT8 377 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 BRD8Q9H0E9 1235 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 MUC3BQ9H195 1237 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 EPB41L1Q9H4G0 881 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 STN1Q9H668 368 aaKnown RBP8.1□□□□□ -1.11
USP54-211ENST00000474929 AGPAT3Q9NRZ7 376 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 CCDC39Q9UFE4 941 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 ZNHIT2Q9UHR6 403 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 WASF2Q9Y6W5 498 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 RTTNQ86VV8 2226 aa8.1□□□□□ -1.11
USP54-211ENST00000474929 DTNBO60941 627 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 CLDN11O75508 207 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 NDUFA10O95299 355 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 ANKRD34CP0C6C1 535 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 SLC2A3P11169 496 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 LPOP22079 712 aaPredicted RBP8.09□□□□□ -1.11
USP54-211ENST00000474929 PTPN4P29074 926 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 TXLNAP40222 546 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 CYP2J2P51589 502 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 ELP6Q0PNE2 266 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 CHAF1BQ13112 559 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 ME3Q16798 604 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.09□□□□□ -1.11
USP54-211ENST00000474929 SKOR2Q2VWA4 1001 aaPredicted RBP8.09□□□□□ -1.11
USP54-211ENST00000474929 ZACNQ401N2 412 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 PLEKHN1Q494U1 663 aaPredicted RBP8.09□□□□□ -1.11
USP54-211ENST00000474929 ZNF805Q5CZA5 627 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 RETSATQ6NUM9 610 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 IGFL3Q6UXB1 125 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 DPY19L3Q6ZPD9 716 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 MRGPRGQ86SM5 289 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 CHST14Q8NCH0 376 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 GALNT6Q8NCL4 622 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 ZNF516Q92618 1163 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 MYEOVQ96EZ4 313 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 ALG14Q96F25 216 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 SLC39A13Q96H72 371 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 RPRD1AQ96P16 312 aaPredicted RBP8.09□□□□□ -1.11
USP54-211ENST00000474929 SPOCK3Q9BQ16 436 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 LLPHQ9BRT6 129 aaKnown RBP8.09□□□□□ -1.11
USP54-211ENST00000474929 APOOQ9BUR5 198 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 NUDT9Q9BW91 350 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 PCDHGA10Q9Y5H3 936 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 CHD5Q8TDI0 1954 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 ABCA4P78363 2273 aa8.09□□□□□ -1.11
USP54-211ENST00000474929 FLNAP21333 2647 aaKnown RBP8.08□□□□□ -1.12
USP54-211ENST00000474929 CXorf51AA0A1B0GTR3 108 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 C16orf96A6NNT2 1141 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 E2F3O00716 465 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 IKBKBO14920 756 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 EXOC3O60645 756 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 TMEM63AO94886 807 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 FBXO21O94952 628 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 RHOBTB3O94955 611 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 VNN1O95497 513 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 IGHEP01854 428 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 CCNB1P14635 433 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 TIMP2P16035 220 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 CD58P19256 250 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 BMP6P22004 513 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 ABL2P42684 1182 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms