RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 HAUS2Q9NVX0 235 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 PCDHGA1Q9Y5H4 931 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 CHD8Q9HCK8 2581 aa23.14■■□□□ 1.3
PTPN4-208ENST00000460289 LRRD1A4D1F6 860 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 NEMP2A6NFY4 417 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 ZNF487B1APH4 448 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 H3BM21 787 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 MATN3O15232 486 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 LZTS3O60299 673 aaPredicted RBP23.14■■□□□ 1.29
PTPN4-208ENST00000460289 PIAS2O75928 621 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 LCA5LO95447 670 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 CSF2P04141 144 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 C1SP09871 688 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 CDK4P11802 303 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 C6P13671 934 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 AGERQ15109 404 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 SPA17Q15506 151 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 ODF2Q5BJF6 829 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 PQLC3Q8N755 202 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 TP53I13Q8NBR0 393 aaPredicted RBP23.14■■□□□ 1.29
PTPN4-208ENST00000460289 FATE1Q969F0 183 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 TSGA13Q96PP4 275 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 RNF157Q96PX1 679 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 MAK16Q9BXY0 300 aaKnown RBP23.14■■□□□ 1.29
PTPN4-208ENST00000460289 NOD2Q9HC29 1040 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 LUC7LQ9NQ29 371 aaKnown RBP23.14■■□□□ 1.29
PTPN4-208ENST00000460289 PCDHGC4Q9Y5F7 938 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 CEP295Q9C0D2 2601 aa23.14■■□□□ 1.29
PTPN4-208ENST00000460289 COL5A1P20908 1838 aaPredicted RBP23.13■■□□□ 1.29
PTPN4-208ENST00000460289 TTC24A2A3L6 582 aaPredicted RBP23.13■■□□□ 1.29
PTPN4-208ENST00000460289 HTRA2O43464 458 aaPredicted RBP23.13■■□□□ 1.29
PTPN4-208ENST00000460289 CES1P23141 567 aa23.13■■□□□ 1.29
PTPN4-208ENST00000460289 CYLC1P35663 651 aaPredicted RBP23.13■■□□□ 1.29
PTPN4-208ENST00000460289 IGFALSP35858 605 aa23.13■■□□□ 1.29
PTPN4-208ENST00000460289 ZNF211Q13398 564 aaPredicted RBP23.13■■□□□ 1.29
PTPN4-208ENST00000460289 UNQ6494/PRO21346Q6UXR6 183 aa23.13■■□□□ 1.29
PTPN4-208ENST00000460289 RHOT1Q8IXI2 618 aa23.13■■□□□ 1.29
PTPN4-208ENST00000460289 PANX2Q96RD6 677 aa23.13■■□□□ 1.29
PTPN4-208ENST00000460289 POLR1EQ9GZS1 481 aaKnown RBP23.13■■□□□ 1.29
PTPN4-208ENST00000460289 NT5MQ9NPB1 228 aa23.13■■□□□ 1.29
PTPN4-208ENST00000460289 MBNL1Q9NR56 388 aaKnown RBP23.13■■□□□ 1.29
PTPN4-208ENST00000460289 DDX56Q9NY93 547 aaKnown RBP23.13■■□□□ 1.29
PTPN4-208ENST00000460289 AMACRQ9UHK6 382 aa23.13■■□□□ 1.29
PTPN4-208ENST00000460289 COQ6Q9Y2Z9 468 aa23.13■■□□□ 1.29
PTPN4-208ENST00000460289 PRKCGP05129 697 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 ALPPL2P10696 532 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 NME1P15531 152 aaKnown RBP23.12■■□□□ 1.29
PTPN4-208ENST00000460289 NOP2P46087 812 aaKnown RBP23.12■■□□□ 1.29
PTPN4-208ENST00000460289 PEX5P50542 639 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 MAXP61244 160 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 ITKQ08881 620 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 CCDC157Q569K6 752 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 ZNF542PQ5EBM4 170 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 DPPA4Q7L190 304 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 GALNT15Q8N3T1 639 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.12■■□□□ 1.29
PTPN4-208ENST00000460289 PDCD6IPQ8WUM4 868 aaKnown RBP23.12■■□□□ 1.29
PTPN4-208ENST00000460289 BTN2A2Q8WVV5 523 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 MAML1Q92585 1016 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 NSMCE3Q96MG7 304 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 ZNF830Q96NB3 372 aaPredicted RBP23.12■■□□□ 1.29
PTPN4-208ENST00000460289 UCKL1Q9NWZ5 548 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 PHTF1Q9UMS5 762 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 PCDHA13Q9Y5I0 950 aa23.12■■□□□ 1.29
PTPN4-208ENST00000460289 SPOPO43791 374 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 NEBLO76041 1014 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 ELFN1P0C7U0 828 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 CKMT2P17540 419 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 HADHBP55084 474 aaKnown RBP23.11■■□□□ 1.29
PTPN4-208ENST00000460289 SEMG2Q02383 582 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 GBE1Q04446 702 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 DNAJC3Q13217 504 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 IRF4Q15306 451 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 WSCD2Q2TBF2 565 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 LIPIQ6XZB0 460 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 TMPRSS7Q7RTY8 843 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 TMTC1Q8IUR5 882 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 CCNYQ8ND76 341 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 OR4C6Q8NH72 309 aa23.11■■□□□ 1.29
PTPN4-208ENST00000460289 RBM22Q9NW64 420 aaKnown RBP eCLIP23.11■■□□□ 1.29
PTPN4-208ENST00000460289 C1QTNF9BB2RNN3 333 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 TRIM38O00635 465 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 SCAMP1O15126 338 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 SIGLEC6O43699 453 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 RFPL3O75679 317 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 MAP3K6O95382 1288 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 CPP00450 1065 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 PROS1P07225 676 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 C1QTNF9P0C862 333 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 CCNB1P14635 433 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 ZFXP17010 805 aaPredicted RBP23.1■■□□□ 1.29
PTPN4-208ENST00000460289 JUNDP17535 347 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 COMTP21964 271 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 RALGDSQ12967 914 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 ILKQ13418 452 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 TPRG1LQ5T0D9 272 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 GAS2L3Q86XJ1 694 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 NDUFAF2Q8N183 169 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 GATA6Q92908 595 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 HDAC11Q96DB2 347 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms