RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 GLB1LQ6UWU2 654 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 RIOX2Q8IUF8 465 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 TIFAQ96CG3 184 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 ZDHHC15Q96MV8 337 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 DIP2AQ14689 1571 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 A0A0G2JLW4 131 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 SLC9A3R1O14745 358 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 CRTAPO75718 401 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 OMPP47874 163 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 DSG4Q86SJ6 1040 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 ANKRD52Q8NB46 1076 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 TRNAU1APQ9NX07 287 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 MTMR4Q9NYA4 1195 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 MALT1Q9UDY8 824 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 RPL36Q9Y3U8 105 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 GRID2O43424 1007 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 PTTG1O95997 202 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 HOXD10P28358 340 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 CLK3P49761 638 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 RORCP51449 518 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 DUPD1Q68J44 220 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 IPMKQ8NFU5 416 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 AP1S3Q96PC3 154 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 SPON2Q9BUD6 331 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 IRX2Q9BZI1 471 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 SEMA4AQ9H3S1 761 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 KLHL1Q9NR64 748 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 PDE10AQ9Y233 779 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 PVALBP20472 110 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 FGFR2P21802 821 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 KLHL26Q53HC5 615 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 MARC1Q5VT66 337 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 MSANTD1Q6ZTZ1 278 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 SLC22A15Q8IZD6 547 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 KCTD10Q9H3F6 313 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 RHOJQ9H4E5 214 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 PCDHB16Q9NRJ7 776 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 CLEC11AQ9Y240 323 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 NWD1Q149M9 1564 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 FADS2P1A8MWK0 482 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 ULK1O75385 1050 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 AGR2O95994 175 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 ANXA8P13928 327 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 SLC6A2P23975 617 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 GRIA2P42262 883 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 CACNB1Q02641 598 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 KAT2AQ92830 837 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 CCDC32Q9BV29 185 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 SDK1Q7Z5N4 2213 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 ABCC3O15438 1527 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 LOC102724428A0A0B4J2F2 783 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 GSG1L2A8MUP6 293 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 EPB42P16452 691 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 TPTEP56180 551 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 SIK1P57059 783 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 PPP4CP60510 307 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ZRANB3Q5FWF4 1079 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ATXN7L2Q5T6C5 722 aaPredicted RBP7.21□□□□□ -1.25
VPS53-204ENST00000437048 CERS6Q6ZMG9 384 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ADGRF4Q8IZF3 695 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 RASGEF1CQ8N431 466 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 TCEAL4Q96EI5 215 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 AURKBQ96GD4 344 aaPredicted RBP7.21□□□□□ -1.25
VPS53-204ENST00000437048 ZNF608Q9ULD9 1512 aaPredicted RBP7.21□□□□□ -1.25
VPS53-204ENST00000437048 IQSEC2Q5JU85 1478 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 F5H5T6 163 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 RIMBP2O15034 1052 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 DHX15O43143 795 aaKnown RBP7.21□□□□□ -1.25
VPS53-204ENST00000437048 AVILO75366 819 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 CCNDBP1O95273 360 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 FCER1AP12319 257 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ALDH4A1P30038 563 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ACSL1P33121 698 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 CCNHP51946 323 aaPredicted RBP7.21□□□□□ -1.25
VPS53-204ENST00000437048 GALNTL6Q49A17 601 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 BRMS1LQ5PSV4 323 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 SERPINA13PQ6UXR4 307 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ARL5BQ96KC2 179 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.21□□□□□ -1.25
VPS53-204ENST00000437048 B3GNT3Q9Y2A9 372 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 PTGES3LE9PB15 166 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 CCNB1P14635 433 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 SREBF1P36956 1147 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ELK3P41970 407 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 NME3Q13232 169 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ATP13A4Q4VNC1 1196 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 OTUD3Q5T2D3 398 aaPredicted RBP7.21□□□□□ -1.25
VPS53-204ENST00000437048 TMC7Q7Z402 723 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 TBC1D16Q8TBP0 767 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 RETREG1Q9H6L5 497 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 FANCFQ9NPI8 374 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 NANSQ9NR45 359 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 BARX2Q9UMQ3 279 aaPredicted RBP7.21□□□□□ -1.25
VPS53-204ENST00000437048 ASB4Q9Y574 426 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 BCKDKO14874 412 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 A1BGP04217 495 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ADAM8P78325 824 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ZNF697Q5TEC3 545 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 ZNF507Q8TCN5 953 aa7.21□□□□□ -1.25
VPS53-204ENST00000437048 IFT27Q9BW83 186 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms