RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TRIM4Q9C037 500 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 POMKQ9H5K3 350 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 RNPEPL1Q9HAU8 725 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 PAPOLBQ9NRJ5 636 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 KLHL3Q9UH77 587 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 ATAD5Q96QE3 1844 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 DCTN3O75935 186 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 UNC5CO95185 931 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 PTGIRP43119 386 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 PPP3CCP48454 512 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 SERPINH1P50454 418 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 SFSWAPQ12872 951 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 PTPRCAPQ14761 206 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 UAP1L1Q3KQV9 507 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 TEX44Q53QW1 395 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 SNAP47Q5SQN1 464 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 RNF43Q68DV7 783 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 ZNF567Q8N184 647 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 ERP27Q96DN0 273 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 CDX2Q99626 313 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 RPP25Q9BUL9 199 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 SPATA6Q9NWH7 488 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 FBXL12Q9NXK8 326 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 ZNF510Q9Y2H8 683 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 SIPA1L1O43166 1804 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 ZFHX2Q9C0A1 2572 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 TRIM49D1C9J1S8 452 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 SLC25A14O95258 325 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 GLP2RO95838 553 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 LMNAP02545 664 aaKnown RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 PCCBP05166 539 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 SESN3P58005 492 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 LMAN2Q12907 356 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 LRRC38Q5VT99 294 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 LONP2Q86WA8 852 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 GLIS1Q8NBF1 620 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 PPFIBP2Q8ND30 876 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 OR4K2Q8NGD2 314 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 RNF217Q8TC41 542 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 GTPBP2Q9BX10 602 aaKnown RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 PCDH9Q9HC56 1237 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 XAB2Q9HCS7 855 aaKnown RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 CLUHO75153 1309 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 NBASA2RRP1 2371 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 OR2AG2A6NM03 316 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 ZNF542PQ5EBM4 170 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 PDE12Q6L8Q7 609 aaKnown RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 MRNIPQ6NTE8 343 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 TMEM154Q6P9G4 183 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 RAB44Q7Z6P3 723 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 NPAS3Q8IXF0 933 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 LEMD2Q8NC56 503 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 DNAJC9Q8WXX5 260 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 OSBPL2Q9H1P3 480 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 GLOD4Q9HC38 313 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 FBXO6Q9NRD1 293 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 ELOVL2Q9NXB9 296 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 VPS51Q9UID3 782 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 SCOCQ9UIL1 159 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 GMEB2Q9UKD1 530 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 USH1CQ9Y6N9 552 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 TMEM189-UBE2V1I3L0A0 370 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 PHGDHO43175 533 aaKnown RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 GPC4O75487 556 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 PAK4O96013 591 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 HIST1H2AGP0C0S8 130 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 VAV1P15498 845 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 MSH3P20585 1137 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 HIST1H2ADP20671 130 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 TRAF7Q6Q0C0 670 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 OTOAQ7RTW8 1153 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 STK40Q8N2I9 435 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 RAB3IL1Q8TBN0 382 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 LRRC8CQ8TDW0 803 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 ART4Q93070 314 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 PPP1R16AQ96I34 528 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 HIST1H2AHQ96KK5 128 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 HIST1H2AJQ99878 128 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 H2AFJQ9BTM1 129 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 LRRC40Q9H9A6 602 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 CHRAC1Q9NRG0 131 aa10.37□□□□□ -0.75
COL6A3-205ENST00000392004 DICER1Q9UPY3 1922 aaKnown RBP10.37□□□□□ -0.75
COL6A3-205ENST00000392004 FAM170BA6NMN3 283 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 TTC34A8MYJ7 566 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 OAS1P00973 400 aaKnown RBP10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CCR2P41597 374 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 MNX1P50219 401 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-205ENST00000392004 PLEKHG6Q3KR16 790 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 FBXO48Q5FWF7 155 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 LRRC6Q86X45 466 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 TMPRSS6Q8IU80 811 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 PSTKQ8IV42 348 aaKnown RBP10.36□□□□□ -0.75
COL6A3-205ENST00000392004 ALLCQ8N6M5 410 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 SCG3Q8WXD2 468 aaKnown RBP10.36□□□□□ -0.75
COL6A3-205ENST00000392004 ACAT2Q9BWD1 397 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 STOML1Q9UBI4 398 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CYP8B1Q9UNU6 501 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 PRKAB1Q9Y478 270 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 FAM186AA6NE01 2351 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 FESP07332 822 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms