RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CPT1BQ92523 772 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 MARK4Q96L34 752 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 MYLK2Q9H1R3 596 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 PCDHGC4Q9Y5F7 938 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 GLYATL1P3A0A0U1RQE8 302 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 C9IYK1 514 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 ADAMTSL2Q86TH1 951 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 ABTB1Q969K4 478 aaPredicted RBP14.97□□□□□ -0.01
COL17A1-201ENST00000353479 PSMG2Q969U7 264 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 CNBD2Q96M20 576 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 TMEM237Q96Q45 408 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 C5orf60A6NFR6 353 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 MATN3O15232 486 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 PEX11AO75192 247 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 UBTFL6P0CB48 400 aaPredicted RBP14.97□□□□□ -0.01
COL17A1-201ENST00000353479 COX7A2P14406 83 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 TCHHL1Q5QJ38 904 aaPredicted RBP14.97□□□□□ -0.01
COL17A1-201ENST00000353479 FNBP1LQ5T0N5 605 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 DNAJB7Q7Z6W7 309 aaPredicted RBP14.97□□□□□ -0.01
COL17A1-201ENST00000353479 STX19Q8N4C7 294 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 PIWIL2Q8TC59 973 aaKnown RBP14.97□□□□□ -0.01
COL17A1-201ENST00000353479 SEPHS2Q99611 448 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 C16orf70Q9BSU1 422 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 TMCO1Q9UM00 188 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 TRPM3Q9HCF6 1732 aaPredicted RBP14.97□□□□□ -0.01
COL17A1-201ENST00000353479 FAM237BA0A1B0GVD1 139 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 A0A1W2PPM1 405 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 RNASEH2AO75792 299 aaKnown RBP14.97□□□□□ -0.01
COL17A1-201ENST00000353479 CFHP08603 1231 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 CAPZA2P47755 286 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 TMED1Q13445 227 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 ZNF621Q6ZSS3 439 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 FERD3LQ96RJ6 166 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 ASF1AQ9Y294 204 aa14.97□□□□□ -0.01
COL17A1-201ENST00000353479 LBPP18428 481 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 POU1F1P28069 291 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 SEC13P55735 322 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 TRAF2Q12933 501 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 LPIN1Q14693 890 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 TTC27Q6P3X3 843 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 C16orf87Q6PH81 154 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 TMPRSS6Q8IU80 811 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 RPL10LQ96L21 214 aaKnown RBP14.96□□□□□ -0.01
COL17A1-201ENST00000353479 TBC1D30Q9Y2I9 924 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 YIPF1Q9Y548 306 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 HCRTO43612 131 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 NDST2P52849 883 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 PLA2G4EQ3MJ16 856 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 RAVER1Q8IY67 606 aaKnown RBP14.96□□□□□ -0.01
COL17A1-201ENST00000353479 RIPOR3Q96MK2 946 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 KCNK4Q9NYG8 393 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 BMP10O95393 424 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 CBX6O95503 412 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 MLYCDO95822 493 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 KCNE1P15382 129 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 CCT8P50990 548 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 KLC1Q07866 573 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 SCIMPQ6UWF3 145 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 CDYL2Q8N8U2 506 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 PCDH19Q8TAB3 1148 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 TMEM175Q9BSA9 504 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 SDCBP2Q9H190 292 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 COMMD8Q9NX08 183 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 SLC12A4Q9UP95 1085 aa14.96□□□□□ -0.01
COL17A1-201ENST00000353479 A0A088AWK7 358 aa14.96□□□□□ -0.02
COL17A1-201ENST00000353479 AP2A1O95782 977 aa14.96□□□□□ -0.02
COL17A1-201ENST00000353479 ZNF10P21506 573 aaPredicted RBP14.96□□□□□ -0.02
COL17A1-201ENST00000353479 HNF4AP41235 474 aa14.96□□□□□ -0.02
COL17A1-201ENST00000353479 CAP1Q01518 475 aa14.96□□□□□ -0.02
COL17A1-201ENST00000353479 XKR6Q5GH73 641 aa14.96□□□□□ -0.02
COL17A1-201ENST00000353479 ICE2Q659A1 982 aa14.96□□□□□ -0.02
COL17A1-201ENST00000353479 KRT78Q8N1N4 520 aa14.96□□□□□ -0.02
COL17A1-201ENST00000353479 VPS33AQ96AX1 596 aa14.96□□□□□ -0.02
COL17A1-201ENST00000353479 KRCC1Q9NPI7 259 aaPredicted RBP14.96□□□□□ -0.02
COL17A1-201ENST00000353479 SPATS2LQ9NUQ6 558 aaKnown RBP14.96□□□□□ -0.02
COL17A1-201ENST00000353479 BTRCQ9Y297 605 aa14.96□□□□□ -0.02
COL17A1-201ENST00000353479 MT-CYBP00156 380 aaPredicted RBP14.95□□□□□ -0.02
COL17A1-201ENST00000353479 GSTM1P09488 218 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 ATP6V0D1P61421 351 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 BST1Q10588 318 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 FRG1Q14331 258 aaKnown RBP14.95□□□□□ -0.02
COL17A1-201ENST00000353479 ATAD3BQ5T9A4 648 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 CRYBG2Q8N1P7 616 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 SPACA7Q96KW9 195 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 SLC25A51Q9H1U9 297 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 CXCR2P25025 360 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 PRMT9Q6P2P2 845 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 EXOC3L1Q86VI1 746 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 TMEM132CQ8N3T6 1108 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 SPPL2AQ8TCT8 520 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 UBE2E3Q969T4 207 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 RHOJQ9H4E5 214 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 ZNF446Q9NWS9 450 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 NUP98P52948 1817 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 RASSF9O75901 435 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 SLC11A1P49279 550 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 TBCELQ5QJ74 424 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 NSMCE2Q96MF7 247 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 SLC9A7Q96T83 725 aa14.95□□□□□ -0.02
COL17A1-201ENST00000353479 BTBD10Q9BSF8 475 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms