RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 SEMG2Q02383 582 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 ZNF235Q14590 738 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 SLC18A3Q16572 532 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 FAXCQ5TGI0 409 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 HES3Q5TGS1 186 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 H2AFVQ71UI9 128 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 CTNNBL1Q8WYA6 563 aaPredicted RBP20.3■□□□□ 0.84
SYNE2-201ENST00000341472 ECHDC3Q96DC8 303 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 APOLD1Q96LR9 279 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 DEF6Q9H4E7 631 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 RCOR3Q9P2K3 495 aaPredicted RBP20.3■□□□□ 0.84
SYNE2-201ENST00000341472 UVRAGQ9P2Y5 699 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 TRPM6Q9BX84 2022 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 SPEGQ15772 3267 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 CHD6Q8TD26 2715 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 TMEM131Q92545 1883 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 CHD5Q8TDI0 1954 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 AQP9O43315 295 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 MAFKO60675 156 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 PROSCO94903 275 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 PEX11BO96011 259 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 TPM1P09493 284 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 MMP12P39900 470 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 IRF4Q15306 451 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 LRRC49Q8IUZ0 686 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 CACTIN-AS1Q8N1I8 211 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 ATPAF2Q8N5M1 289 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 KCTD6Q8NC69 237 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 FAM71BQ8TC56 605 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 DNAJC7Q99615 494 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 SLC13A1Q9BZW2 595 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 USP29Q9HBJ7 922 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 DKK4Q9UBT3 224 aa20.29■□□□□ 0.84
SYNE2-201ENST00000341472 ARID1BQ8NFD5 2236 aaPredicted RBP20.29■□□□□ 0.84
SYNE2-201ENST00000341472 DOCK9Q9BZ29 2069 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 A0A1W2PQ67 120 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 TTC24A2A3L6 582 aaPredicted RBP20.28■□□□□ 0.84
SYNE2-201ENST00000341472 TRAFD1O14545 582 aaPredicted RBP20.28■□□□□ 0.84
SYNE2-201ENST00000341472 TPP1O14773 563 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 AKR1B10O60218 316 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 MYF5P13349 255 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 INSM1Q01101 510 aaPredicted RBP20.28■□□□□ 0.84
SYNE2-201ENST00000341472 PPARDQ03181 441 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 MMRN1Q13201 1228 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 INPP5AQ14642 412 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 AGERQ15109 404 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 ASTE1Q2TB18 679 aaPredicted RBP20.28■□□□□ 0.84
SYNE2-201ENST00000341472 ATP13A4Q4VNC1 1196 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 MARC1Q5VT66 337 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 MACC1Q6ZN28 852 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 PHACTR4Q8IZ21 702 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 RFFLQ8WZ73 363 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 NSMCE3Q96MG7 304 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 NUDCD1Q96RS6 583 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 IL12RB2Q99665 862 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 SCUBE2Q9NQ36 999 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 LCMT1Q9UIC8 334 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 SALL4Q9UJQ4 1053 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 PCDHGC4Q9Y5F7 938 aa20.28■□□□□ 0.84
SYNE2-201ENST00000341472 NYNRINQ9P2P1 1898 aaKnown RBP20.28■□□□□ 0.84
SYNE2-201ENST00000341472 ANKRD11Q6UB99 2663 aaPredicted RBP20.27■□□□□ 0.84
SYNE2-201ENST00000341472 SSU72P8A0A1W2PR75 194 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 CD48P09326 243 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 HTR1BP28222 390 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 BLKP51451 505 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 ARSEP51690 589 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 ADKP55263 362 aaKnown RBP20.27■□□□□ 0.84
SYNE2-201ENST00000341472 C1orf61Q13536 156 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 PRRT3Q5FWE3 981 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 ZCCHC8Q6NZY4 707 aaKnown RBP20.27■□□□□ 0.84
SYNE2-201ENST00000341472 VSTM4Q8IW00 320 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 MAP7D3Q8IWC1 876 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 RBFAQ8N0V3 343 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 RNF214Q8ND24 703 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 APOOQ9BUR5 198 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 PACSIN1Q9BY11 444 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 TCEAL2Q9H3H9 227 aaPredicted RBP20.27■□□□□ 0.84
SYNE2-201ENST00000341472 NOD2Q9HC29 1040 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 NCKIPSDQ9NZQ3 722 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 APOBEC3BQ9UH17 382 aaKnown RBP20.27■□□□□ 0.84
SYNE2-201ENST00000341472 CLCA2Q9UQC9 943 aa20.27■□□□□ 0.84
SYNE2-201ENST00000341472 PKD1L2Q7Z442 2459 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 A8MX80 341 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 GCATO75600 419 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 RECQL5O94762 991 aaPredicted RBP20.26■□□□□ 0.83
SYNE2-201ENST00000341472 MT-CO3P00414 261 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 KRT7P08729 469 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 CR2P20023 1033 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 GJC1P36383 396 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 RALGDSQ12967 914 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 PDK2Q15119 407 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 DEFB133Q30KQ1 61 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 ENPP7Q6UWV6 458 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 LIPIQ6XZB0 460 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 DPPA4Q7L190 304 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 CPNE8Q86YQ8 564 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 PGBD5Q8N414 524 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 ATL2Q8NHH9 583 aa20.26■□□□□ 0.83
SYNE2-201ENST00000341472 PDCD6IPQ8WUM4 868 aaKnown RBP20.26■□□□□ 0.83
SYNE2-201ENST00000341472 TBATAQ96M53 351 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms