RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ATL1Q8WXF7 558 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 ZYG11BQ9C0D3 744 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 TMEM216Q9P0N5 145 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 ATXN10Q9UBB4 475 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 AREL1O15033 823 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 PAEPP09466 180 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 BMP7P18075 431 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 CCNA2P20248 432 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 NRSN1Q8IZ57 195 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 FBXO9Q9UK97 447 aaPredicted RBP12.68□□□□□ -0.38
SDC3-201ENST00000336798 TNPO3Q9Y5L0 923 aaKnown RBP12.68□□□□□ -0.38
SDC3-201ENST00000336798 CROCC2H7BZ55 1655 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 CST1P01037 141 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 PCCBP05166 539 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 ITPKAP23677 461 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 NOMO2Q5JPE7 1267 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 ATG14Q6ZNE5 492 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 GALNTL5Q7Z4T8 443 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 TCAIMQ8N3R3 496 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 ZFP28Q8NHY6 868 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 ANKRD27Q96NW4 1050 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 POLR3HQ9Y535 204 aaPredicted RBP12.68□□□□□ -0.38
SDC3-201ENST00000336798 IQCF5A8MTL0 148 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 PSMD9O00233 223 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 PAPSS1O43252 624 aaPredicted RBP12.68□□□□□ -0.38
SDC3-201ENST00000336798 AQP1P29972 269 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 RPS6KA3P51812 740 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 AFTPHQ6ULP2 937 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 TMEM86AQ8N2M4 240 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 LINGO1Q96FE5 620 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 KLHL5Q96PQ7 755 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 PANX1Q96RD7 426 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 EGFL7Q9UHF1 273 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 APOC4-APOC2K7ER74 178 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 KPNA5O15131 536 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 AVILO75366 819 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 APOC2P02655 101 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 PRLRP16471 622 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 CXCR2P25025 360 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 CEBPGP53567 150 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 ULK3Q6PHR2 472 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 PSMA8Q8TAA3 256 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 LENG1Q96BZ8 264 aaPredicted RBP12.68□□□□□ -0.38
SDC3-201ENST00000336798 BRINP2Q9C0B6 783 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 IL22Q9GZX6 179 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 EHD4Q9H223 541 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 CLIC5Q9NZA1 410 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 LGR5O75473 907 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 UBA1P22314 1058 aaKnown RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 UGT2B15P54855 530 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 SPIRE1Q08AE8 756 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 SEC23AQ15436 765 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 TAB1Q15750 504 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 INTS11Q5TA45 600 aaKnown RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 GLIS3Q8NEA6 775 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 SNRNP25Q9BV90 132 aaKnown RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 LMAN2LQ9H0V9 348 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 CD84Q9UIB8 345 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 PSMD13Q9UNM6 376 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 PCDHB9Q9Y5E1 797 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 SALL1Q9NSC2 1324 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 DCLK1O15075 740 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 ULK1O75385 1050 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 MC4RP32245 332 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 PRKAA2P54646 552 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 WASHC2DQ5SRD0 308 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 ETNPPLQ8TBG4 499 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 NR2E3Q9Y5X4 410 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 U3KQV3 271 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 STX16-NPEPL1H3BU86 382 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 STX16O14662 325 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 SLC9A3R1O14745 358 aaPredicted RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 ADCY6O43306 1168 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 DNTTP04053 509 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 DBIP07108 87 aaKnown RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 ELFN1P0C7U0 828 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 USP4Q13107 963 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 RRP1BQ14684 758 aaKnown RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 MED22Q15528 200 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 CELF3Q5SZQ8 465 aaKnown RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 TMEM63BQ5T3F8 832 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 MZT2BQ6NZ67 158 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 TEX47Q8TBZ9 253 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 AARSD1Q9BTE6 412 aaKnown RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 CNOT6Q9ULM6 557 aaKnown RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 NPEPPSL1A6NEC2 478 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 NOS1APO75052 506 aaPredicted RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 FTH1P02794 183 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 HGFP14210 728 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 IQSEC1Q6DN90 963 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 C12orf50Q8NA57 414 aaPredicted RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 CAVIN3Q969G5 261 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 PLEKHG4BQ96PX9 1271 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 GPER1Q99527 375 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 LGMNQ99538 433 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 TRMT13Q9NUP7 481 aaKnown RBP12.67□□□□□ -0.38
SDC3-201ENST00000336798 CARD8Q9Y2G2 431 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 WWP2O00308 870 aa12.67□□□□□ -0.38
SDC3-201ENST00000336798 FGF10O15520 208 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms