RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 A8MX80 341 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 CHRM3P20309 590 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 AIF1P55008 147 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 C16orf59Q7L2K0 433 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 ABI1Q8IZP0 508 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 RGS18Q9NS28 235 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 TNFRSF10BO14763 440 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 FKBP6O75344 327 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 VCLP18206 1134 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 ALDH1A3P47895 512 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 CDKN1CP49918 316 aaPredicted RBP16.72■□□□□ 0.27
VPS54-201ENST00000272322 MTTPP55157 894 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 RPS24P62847 133 aaKnown RBP16.72■□□□□ 0.27
VPS54-201ENST00000272322 PTK2BQ14289 1009 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 PLA2G4EQ3MJ16 856 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 SIRPB2Q5JXA9 342 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 VARS2Q5ST30 1063 aaKnown RBP16.72■□□□□ 0.27
VPS54-201ENST00000272322 OR52E8Q6IFG1 317 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 PGM2L1Q6PCE3 622 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 CUZD1Q86UP6 607 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 NUP93Q8N1F7 819 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 ICA1LQ8NDH6 482 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 FAM110BQ8TC76 370 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 RRN3Q9NYV6 651 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 SORCS3Q9UPU3 1222 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 DTNAQ9Y4J8 743 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 TIMM22Q9Y584 194 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 GRIK3Q13003 919 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 ZNF235Q14590 738 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 CLLU1OSQ5K130 101 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 C6orf52Q5T4I8 152 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 LINGO4Q6UY18 593 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 PGBD5Q8N414 524 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 OR13J1Q8NGT2 312 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 LRCH3Q96II8 777 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 UBE2OQ9C0C9 1292 aaKnown RBP16.72■□□□□ 0.27
VPS54-201ENST00000272322 VWA7Q9Y334 891 aa16.72■□□□□ 0.27
VPS54-201ENST00000272322 UBXN8O00124 270 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 CCNT2O60583 730 aaKnown RBP16.71■□□□□ 0.27
VPS54-201ENST00000272322 RAMP2O60895 175 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 BMP1P13497 986 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 SEMG2Q02383 582 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 SULT2A1Q06520 285 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 TMCO4Q5TGY1 634 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 FAM117BQ6P1L5 589 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 PRSS55Q6UWB4 352 aaPredicted RBP16.71■□□□□ 0.27
VPS54-201ENST00000272322 GKN1Q9NS71 199 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 TBC1D13Q9NVG8 400 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 CCDC189A1A4V9 331 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 E7ENX8 843 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 GFAPP14136 432 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 FMO4P31512 558 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 RENBPP51606 427 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 FOXA1P55317 472 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 FBXL19Q6PCT2 694 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 POTEHQ6S545 545 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 GATA6Q92908 595 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 RTKNQ9BST9 563 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 SMOC2Q9H3U7 446 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 SEMA4BQ9NPR2 832 aaPredicted RBP16.71■□□□□ 0.27
VPS54-201ENST00000272322 PCDHGC4Q9Y5F7 938 aa16.71■□□□□ 0.27
VPS54-201ENST00000272322 A0A1B0GTL3 188 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 TMEM114B3SHH9 223 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 SDHDO14521 159 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 FOLH1Q04609 750 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 CYTH1Q15438 398 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 TMEM173Q86WV6 379 aaPredicted RBP16.71■□□□□ 0.26
VPS54-201ENST00000272322 LGI2Q8N0V4 545 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 OR6K2Q8NGY2 324 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 TRPC4APQ8TEL6 797 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 DPF3Q92784 378 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 C3orf30Q96M34 536 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 SERPINB11Q96P15 392 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 HAPLN3Q96S86 360 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 ZYG11BQ9C0D3 744 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 EGFL7Q9UHF1 273 aa16.71■□□□□ 0.26
VPS54-201ENST00000272322 DICER1Q9UPY3 1922 aaKnown RBP16.7■□□□□ 0.26
VPS54-201ENST00000272322 BNIP3LO60238 219 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 RSPO2Q6UXX9 243 aaPredicted RBP16.7■□□□□ 0.26
VPS54-201ENST00000272322 SUSD3Q96L08 255 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 EFCAB1Q9HAE3 211 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 IGSF5Q9NSI5 407 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 UBFD1O14562 309 aaKnown RBP16.7■□□□□ 0.26
VPS54-201ENST00000272322 UBDO15205 165 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 ATP5F1P24539 256 aaPredicted RBP16.7■□□□□ 0.26
VPS54-201ENST00000272322 YBX1P67809 324 aaKnown RBP16.7■□□□□ 0.26
VPS54-201ENST00000272322 FASTKQ14296 549 aaKnown RBP16.7■□□□□ 0.26
VPS54-201ENST00000272322 CAPRIN1Q14444 709 aaKnown RBP16.7■□□□□ 0.26
VPS54-201ENST00000272322 KLC3Q6P597 504 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 NUDT8Q8WV74 236 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 KLHL32Q96NJ5 620 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 PKP2Q99959 881 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 MRPL57Q9BQC6 102 aaKnown RBP16.7■□□□□ 0.26
VPS54-201ENST00000272322 CLIC5Q9NZA1 410 aa16.7■□□□□ 0.26
VPS54-201ENST00000272322 A0A1B0GTW7 788 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 H3BNX3 289 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 IPO13O94829 963 aaKnown RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 GOT2P00505 430 aaKnown RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 LINC00032P0C843 101 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 CYBAP13498 195 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms