RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 UBQLN1Q9UMX0 589 aaKnown RBP12.48□□□□□ -0.41
NUP88-201ENST00000225696 TIMM13Q9Y5L4 95 aaPredicted RBP12.48□□□□□ -0.41
NUP88-201ENST00000225696 GPR32O75388 356 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 PMPCBO75439 489 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 IPO13O94829 963 aaKnown RBP12.47□□□□□ -0.41
NUP88-201ENST00000225696 BMP10O95393 424 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 IMPDH2P12268 514 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 DAOAP59103 153 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 SCAPQ12770 1279 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 TRAP1Q12931 704 aaKnown RBP12.47□□□□□ -0.41
NUP88-201ENST00000225696 CAPRIN1Q14444 709 aaKnown RBP12.47□□□□□ -0.41
NUP88-201ENST00000225696 TMEM207Q6UWW9 146 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 PDZD4Q76G19 769 aaPredicted RBP12.47□□□□□ -0.41
NUP88-201ENST00000225696 FAM35AQ86V20 835 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 GPR180Q86V85 440 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 OFCC1Q8IZS5 231 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 ANKFN1Q8N957 763 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 NTAN1Q96AB6 310 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 DUS3LQ96G46 650 aaKnown RBP12.47□□□□□ -0.41
NUP88-201ENST00000225696 SMOQ99835 787 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 CROTQ9UKG9 612 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 BRCA1P38398 1863 aaKnown RBP12.47□□□□□ -0.41
NUP88-201ENST00000225696 SCN4AP35499 1836 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 NCAM2O15394 837 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 HUS1O60921 280 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 ATP6V1G1O75348 118 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 GPC4O75487 556 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 BMP2P12643 396 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 CPB1P15086 417 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 TAF6P49848 677 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 APLP1P51693 650 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 SLC5A3P53794 718 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 CDH13P55290 713 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 DNAJB13P59910 316 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 TNK2Q07912 1038 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 PMS2P3Q13401 168 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 VPS26BQ4G0F5 336 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 DHRS4L2Q6PKH6 230 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 BHLHA9Q7RTU4 235 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 LYSMD3Q7Z3D4 306 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 ANKRD23Q86SG2 305 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 C2CD4AQ8NCU7 369 aaPredicted RBP12.47□□□□□ -0.41
NUP88-201ENST00000225696 OR2T34Q8NGX1 318 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 OR2T3Q8NH03 318 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 TOP1MTQ969P6 601 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 TNIP3Q96KP6 325 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 BIRC8Q96P09 236 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 MPHOSPH6Q99547 160 aaKnown RBP12.47□□□□□ -0.41
NUP88-201ENST00000225696 OSBPL6Q9BZF3 934 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 GSTO2Q9H4Y5 243 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 FBXO5Q9UKT4 447 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 FAF1Q9UNN5 650 aaPredicted RBP12.47□□□□□ -0.41
NUP88-201ENST00000225696 SLC8A2Q9UPR5 921 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 TRAF6Q9Y4K3 522 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 NRCAMQ92823 1304 aa12.47□□□□□ -0.41
NUP88-201ENST00000225696 A0A0G2JLL6 359 aaPredicted RBP12.46□□□□□ -0.41
NUP88-201ENST00000225696 MYBPHLA2RUH7 354 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 LRRC14BA6NHZ5 514 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 SLC25A27O95847 323 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 YAP1P46937 504 aaKnown RBP12.46□□□□□ -0.41
NUP88-201ENST00000225696 CD151P48509 253 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 HCAR3P49019 387 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 PSMD7P51665 324 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 TUBA4AP68366 448 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 PFKPQ01813 784 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 SEPT6Q14141 434 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 FAM83EQ2M2I3 478 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 SAMD4BQ5PRF9 694 aaKnown RBP12.46□□□□□ -0.41
NUP88-201ENST00000225696 RWDD4Q6NW29 188 aaKnown RBP12.46□□□□□ -0.41
NUP88-201ENST00000225696 LARP4Q71RC2 724 aaKnown RBP eCLIP12.46□□□□□ -0.41
NUP88-201ENST00000225696 ERMP1Q7Z2K6 904 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 GPR141Q7Z602 305 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 PRRT2Q7Z6L0 340 aaPredicted RBP12.46□□□□□ -0.41
NUP88-201ENST00000225696 RBM12BQ8IXT5 1001 aaKnown RBP12.46□□□□□ -0.41
NUP88-201ENST00000225696 SHCBP1Q8NEM2 672 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 PPTC7Q8NI37 304 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 HM13Q8TCT9 377 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 KCTD13Q8WZ19 329 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 PBXIP1Q96AQ6 731 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 SLC9A7Q96T83 725 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 BRD8Q9H0E9 1235 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 SIK2Q9H0K1 926 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 WDCPQ9H6R7 721 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 TREX1Q9NSU2 369 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 NSMCE4AQ9NXX6 385 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 NEU3Q9UQ49 428 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 CLEC11AQ9Y240 323 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 TCAF1Q9Y4C2 921 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 SQORQ9Y6N5 450 aa12.46□□□□□ -0.41
NUP88-201ENST00000225696 SH3PXD2BA1X283 911 aa12.46□□□□□ -0.42
NUP88-201ENST00000225696 CACNG3O60359 315 aa12.46□□□□□ -0.42
NUP88-201ENST00000225696 SRP72O76094 671 aaKnown RBP12.46□□□□□ -0.42
NUP88-201ENST00000225696 MT-ND1P03886 318 aa12.46□□□□□ -0.42
NUP88-201ENST00000225696 GPX3P22352 226 aa12.46□□□□□ -0.42
NUP88-201ENST00000225696 VARSP26640 1264 aaKnown RBP12.46□□□□□ -0.42
NUP88-201ENST00000225696 AFF1P51825 1210 aaKnown RBP12.46□□□□□ -0.42
NUP88-201ENST00000225696 MAPK10P53779 464 aa12.46□□□□□ -0.42
NUP88-201ENST00000225696 FOXA1P55317 472 aa12.46□□□□□ -0.42
NUP88-201ENST00000225696 PRPSAP1Q14558 356 aa12.46□□□□□ -0.42
NUP88-201ENST00000225696 UGT3A2Q3SY77 523 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms