RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 ISCUQ9H1K1 167 aa22.3■■□□□ 1.16
VTI1B-201ENST00000216456 ZWILCHQ9H900 591 aa22.3■■□□□ 1.16
VTI1B-201ENST00000216456 SPASTQ9UBP0 616 aa22.3■■□□□ 1.16
VTI1B-201ENST00000216456 ATP8A1Q9Y2Q0 1164 aa22.3■■□□□ 1.16
VTI1B-201ENST00000216456 ATRXP46100 2492 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 COL27A1Q8IZC6 1860 aaPredicted RBP22.29■■□□□ 1.16
VTI1B-201ENST00000216456 YY2O15391 372 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 ABCG1P45844 678 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 FANCCQ00597 558 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 ELP6Q0PNE2 266 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 PTK2BQ14289 1009 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 PTPRRQ15256 657 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 ALG11Q2TAA5 492 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 HID1Q8IV36 788 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 CACTIN-AS1Q8N1I8 211 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 PELI3Q8N2H9 469 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 CPLX3Q8WVH0 158 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 CINPQ9BW66 212 aaPredicted RBP22.29■■□□□ 1.16
VTI1B-201ENST00000216456 ABCG4Q9H172 646 aa22.29■■□□□ 1.16
VTI1B-201ENST00000216456 LZTS3O60299 673 aaPredicted RBP22.28■■□□□ 1.16
VTI1B-201ENST00000216456 USP12O75317 370 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 GM2AP17900 193 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 PBX1P40424 430 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 SCNN1BP51168 640 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 YPEL5P62699 121 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 PPARDQ03181 441 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 CCDC173Q0VFZ6 552 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 TDRD12Q587J7 1177 aaKnown RBP22.28■■□□□ 1.16
VTI1B-201ENST00000216456 CFAP58Q5T655 872 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 PPP1R2P3Q6NXS1 205 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 ENPP7Q6UWV6 458 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 SFTPA2Q8IWL1 248 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 PGBD5Q8N414 524 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 NAF1Q96HR8 494 aaKnown RBP22.28■■□□□ 1.16
VTI1B-201ENST00000216456 ZNF641Q96N77 438 aaPredicted RBP22.28■■□□□ 1.16
VTI1B-201ENST00000216456 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.28■■□□□ 1.16
VTI1B-201ENST00000216456 APOOQ9BUR5 198 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 BOCQ9BWV1 1114 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 C1QTNF7Q9BXJ2 289 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 SLC13A1Q9BZW2 595 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 THAP2Q9H0W7 228 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 SIRPGQ9P1W8 387 aa22.28■■□□□ 1.16
VTI1B-201ENST00000216456 EME2A4GXA9 379 aaPredicted RBP22.27■■□□□ 1.16
VTI1B-201ENST00000216456 PEX11BO96011 259 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 GP1BAP07359 652 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 RARAP10276 462 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 DUSP3P51452 185 aaPredicted RBP22.27■■□□□ 1.16
VTI1B-201ENST00000216456 GABREP78334 506 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 IL10RBQ08334 325 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 NR0B2Q15466 257 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 ERAP2Q6P179 960 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 BRAT1Q6PJG6 821 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 BTN2A2Q8WVV5 523 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 ECHDC3Q96DC8 303 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 TUBGCP5Q96RT8 1024 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 ATP13A3Q9H7F0 1226 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.27■■□□□ 1.16
VTI1B-201ENST00000216456 SALL4Q9UJQ4 1053 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 SCINQ9Y6U3 715 aa22.27■■□□□ 1.16
VTI1B-201ENST00000216456 EIF3CLB5ME19 914 aaKnown RBP22.26■■□□□ 1.15
VTI1B-201ENST00000216456 LMO7DNF2Z398 122 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 TRAFD1O14545 582 aaPredicted RBP22.26■■□□□ 1.15
VTI1B-201ENST00000216456 TPP1O14773 563 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 RECQL5O94762 991 aaPredicted RBP22.26■■□□□ 1.15
VTI1B-201ENST00000216456 ANXA6P08133 673 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 SERPINA4P29622 427 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 CSNK1DP48730 415 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 BCL2L1Q07817 233 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 LBRQ14739 615 aaKnown RBP22.26■■□□□ 1.15
VTI1B-201ENST00000216456 TBC1D25Q3MII6 688 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 C6orf132Q5T0Z8 1188 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 POLNQ7Z5Q5 900 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 KYQ8NBH2 561 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 PCDH19Q8TAB3 1148 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 SNIP1Q8TAD8 396 aaKnown RBP22.26■■□□□ 1.15
VTI1B-201ENST00000216456 HCAR2Q8TDS4 363 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 FGF11Q92914 225 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 PDXPQ96GD0 296 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 ATXN7L3BQ96GX2 97 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 CSPG4P5Q96PW8 444 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 DEPDC7Q96QD5 511 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 EIF3CQ99613 913 aaKnown RBP22.26■■□□□ 1.15
VTI1B-201ENST00000216456 MRPL40Q9NQ50 206 aaKnown RBP22.26■■□□□ 1.15
VTI1B-201ENST00000216456 GULP1Q9UBP9 304 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 RABGEF1Q9UJ41 708 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 PCDHGC4Q9Y5F7 938 aa22.26■■□□□ 1.15
VTI1B-201ENST00000216456 ANKRD36A6QL64 1941 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 RP1P56715 2156 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 A0A087X0T9 212 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 A0A0U1RQS6 177 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 FAM228BP0C875 321 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 PCK1P35558 622 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 HCAR3P49019 387 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 SUOXP51687 545 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 HK3P52790 923 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 MAXP61244 160 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 MMRN1Q13201 1228 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 GRM3Q14832 879 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 NFATC4Q14934 902 aa22.25■■□□□ 1.15
VTI1B-201ENST00000216456 DPYSL2Q16555 572 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms