RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 QRICH2Q9H0J4 1663 aa12.5□□□□□ -0.41
LINC00339-212ENST00000642072 WNK3Q9BYP7 1800 aa12.5□□□□□ -0.41
LINC00339-212ENST00000642072 CPSF1Q10570 1443 aaKnown RBP12.49□□□□□ -0.41
LINC00339-212ENST00000642072 WDR17Q8IZU2 1322 aa12.49□□□□□ -0.41
LINC00339-212ENST00000642072 NLRP6P59044 892 aa12.48□□□□□ -0.41
LINC00339-212ENST00000642072 DDB1Q16531 1140 aa12.48□□□□□ -0.41
LINC00339-212ENST00000642072 MARCH10Q8NA82 808 aaPredicted RBP12.48□□□□□ -0.41
LINC00339-212ENST00000642072 BCL11BQ9C0K0 894 aaPredicted RBP12.48□□□□□ -0.41
LINC00339-212ENST00000642072 PDGFDQ9GZP0 370 aaPredicted RBP12.48□□□□□ -0.41
LINC00339-212ENST00000642072 GOLGB1Q14789 3259 aaKnown RBP12.47□□□□□ -0.41
LINC00339-212ENST00000642072 NFAT5O94916 1531 aa12.47□□□□□ -0.41
LINC00339-212ENST00000642072 TOM1L2Q6ZVM7 507 aa12.46□□□□□ -0.41
LINC00339-212ENST00000642072 ARHGEF25Q86VW2 580 aa12.46□□□□□ -0.41
LINC00339-212ENST00000642072 PPP1R1BQ9UD71 204 aaPredicted RBP12.46□□□□□ -0.41
LINC00339-212ENST00000642072 PTGER2P43116 358 aa12.45□□□□□ -0.42
LINC00339-212ENST00000642072 CDCA7Q9BWT1 371 aaPredicted RBP12.45□□□□□ -0.42
LINC00339-212ENST00000642072 TRPM1Q7Z4N2 1603 aa12.44□□□□□ -0.42
LINC00339-212ENST00000642072 TTC21BQ7Z4L5 1316 aa12.44□□□□□ -0.42
LINC00339-212ENST00000642072 ABCC6O95255 1503 aa12.44□□□□□ -0.42
LINC00339-212ENST00000642072 ZBTB7CA1YPR0 619 aa12.44□□□□□ -0.42
LINC00339-212ENST00000642072 CARD10Q9BWT7 1032 aa12.44□□□□□ -0.42
LINC00339-212ENST00000642072 MYOM1P52179 1685 aa12.44□□□□□ -0.42
LINC00339-212ENST00000642072 AKAP12Q02952 1782 aa12.43□□□□□ -0.42
LINC00339-212ENST00000642072 ZBTB7AO95365 584 aa12.42□□□□□ -0.42
LINC00339-212ENST00000642072 TXNRD1Q16881 649 aa12.42□□□□□ -0.42
LINC00339-212ENST00000642072 KCNH5Q8NCM2 988 aa12.42□□□□□ -0.42
LINC00339-212ENST00000642072 SGIP1Q9BQI5 828 aa12.42□□□□□ -0.42
LINC00339-212ENST00000642072 RGPD5Q99666 1765 aa12.42□□□□□ -0.42
LINC00339-212ENST00000642072 TNS2Q63HR2 1409 aa12.42□□□□□ -0.42
LINC00339-212ENST00000642072 EVC2Q86UK5 1308 aa12.41□□□□□ -0.42
LINC00339-212ENST00000642072 PAPPAQ13219 1627 aa12.41□□□□□ -0.42
LINC00339-212ENST00000642072 L3MBTL2Q969R5 705 aa12.41□□□□□ -0.42
LINC00339-212ENST00000642072 TTC21AQ8NDW8 1320 aa12.4□□□□□ -0.42
LINC00339-212ENST00000642072 SLC15A2Q16348 729 aa12.4□□□□□ -0.42
LINC00339-212ENST00000642072 ZNF692Q9BU19 519 aaPredicted RBP12.4□□□□□ -0.42
LINC00339-212ENST00000642072 NHSQ6T4R5 1651 aa12.4□□□□□ -0.42
LINC00339-212ENST00000642072 USP54Q70EL1 1684 aa12.4□□□□□ -0.42
LINC00339-212ENST00000642072 CCDC7Q96M83 1385 aa12.4□□□□□ -0.42
LINC00339-212ENST00000642072 USP31Q70CQ4 1352 aa12.39□□□□□ -0.43
LINC00339-212ENST00000642072 CD163L1Q9NR16 1453 aa12.39□□□□□ -0.43
LINC00339-212ENST00000642072 MON2Q7Z3U7 1717 aa12.38□□□□□ -0.43
LINC00339-212ENST00000642072 STK32BQ9NY57 414 aa12.38□□□□□ -0.43
LINC00339-212ENST00000642072 ATF5Q9Y2D1 282 aaPredicted RBP12.38□□□□□ -0.43
LINC00339-212ENST00000642072 ERBB3P21860 1342 aa12.37□□□□□ -0.43
LINC00339-212ENST00000642072 CEP350Q5VT06 3117 aa12.37□□□□□ -0.43
LINC00339-212ENST00000642072 DCAF8L1A6NGE4 600 aa12.37□□□□□ -0.43
LINC00339-212ENST00000642072 EXOC5O00471 708 aa12.37□□□□□ -0.43
LINC00339-212ENST00000642072 SOX12O15370 315 aa12.37□□□□□ -0.43
LINC00339-212ENST00000642072 CSB-PGBD3P0DP91 1061 aa12.37□□□□□ -0.43
LINC00339-212ENST00000642072 SYT17Q9BSW7 474 aa12.37□□□□□ -0.43
LINC00339-212ENST00000642072 FHDC1Q9C0D6 1143 aaPredicted RBP12.37□□□□□ -0.43
LINC00339-212ENST00000642072 MTFR1LQ9H019 292 aa12.37□□□□□ -0.43
LINC00339-212ENST00000642072 KTN1Q86UP2 1357 aaKnown RBP12.37□□□□□ -0.43
LINC00339-212ENST00000642072 MAP3K5Q99683 1374 aa12.36□□□□□ -0.43
LINC00339-212ENST00000642072 SBNO2Q9Y2G9 1366 aa12.36□□□□□ -0.43
LINC00339-212ENST00000642072 ZNF784Q8NCA9 323 aaPredicted RBP12.36□□□□□ -0.43
LINC00339-212ENST00000642072 ROCK2O75116 1388 aaKnown RBP12.35□□□□□ -0.43
LINC00339-212ENST00000642072 ZNF827Q17R98 1081 aa12.34□□□□□ -0.43
LINC00339-212ENST00000642072 BTAF1O14981 1849 aa12.33□□□□□ -0.44
LINC00339-212ENST00000642072 NME9Q86XW9 330 aa12.33□□□□□ -0.44
LINC00339-212ENST00000642072 ACSBG1Q96GR2 724 aa12.33□□□□□ -0.44
LINC00339-212ENST00000642072 SIN3AQ96ST3 1273 aa12.33□□□□□ -0.44
LINC00339-212ENST00000642072 IL2RBP14784 551 aa12.32□□□□□ -0.44
LINC00339-212ENST00000642072 LRRC4BQ9NT99 713 aa12.32□□□□□ -0.44
LINC00339-212ENST00000642072 LTN1O94822 1766 aa12.32□□□□□ -0.44
LINC00339-212ENST00000642072 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.31□□□□□ -0.44
LINC00339-212ENST00000642072 ARXQ96QS3 562 aa12.31□□□□□ -0.44
LINC00339-212ENST00000642072 NLRP2Q9NX02 1062 aa12.31□□□□□ -0.44
LINC00339-212ENST00000642072 COL24A1Q17RW2 1714 aa12.31□□□□□ -0.44
LINC00339-212ENST00000642072 ANKRD24Q8TF21 1146 aa12.3□□□□□ -0.44
LINC00339-212ENST00000642072 AKT1S1Q96B36 256 aa12.3□□□□□ -0.44
LINC00339-212ENST00000642072 EDC4Q6P2E9 1401 aaKnown RBP12.29□□□□□ -0.44
LINC00339-212ENST00000642072 QSER1Q2KHR3 1735 aa12.29□□□□□ -0.44
LINC00339-212ENST00000642072 SLC12A5Q9H2X9 1139 aa12.28□□□□□ -0.44
LINC00339-212ENST00000642072 CHD4Q14839 1912 aa12.28□□□□□ -0.44
LINC00339-212ENST00000642072 A0A1W2PP64 1363 aa12.28□□□□□ -0.44
LINC00339-212ENST00000642072 PNPLA7Q6ZV29 1317 aa12.27□□□□□ -0.45
LINC00339-212ENST00000642072 NSD2O96028 1365 aa12.27□□□□□ -0.45
LINC00339-212ENST00000642072 FAM208AQ9UK61 1670 aaKnown RBP12.26□□□□□ -0.45
LINC00339-212ENST00000642072 SLC27A3Q5K4L6 730 aa12.26□□□□□ -0.45
LINC00339-212ENST00000642072 TUBGCP6Q96RT7 1819 aa12.25□□□□□ -0.45
LINC00339-212ENST00000642072 C1QTNF8P60827 252 aa12.25□□□□□ -0.45
LINC00339-212ENST00000642072 NEUROD1Q13562 356 aa12.25□□□□□ -0.45
LINC00339-212ENST00000642072 SLC16A10Q8TF71 515 aa12.25□□□□□ -0.45
LINC00339-212ENST00000642072 IP6K1Q92551 441 aa12.25□□□□□ -0.45
LINC00339-212ENST00000642072 SHANK3Q9BYB0 1731 aa12.25□□□□□ -0.45
LINC00339-212ENST00000642072 LY75O60449 1722 aa12.24□□□□□ -0.45
LINC00339-212ENST00000642072 HDGFL2Q7Z4V5 671 aaPredicted RBP12.24□□□□□ -0.45
LINC00339-212ENST00000642072 ANKRD36BQ8N2N9 1353 aa12.24□□□□□ -0.45
LINC00339-212ENST00000642072 TMC1Q8TDI8 760 aa12.24□□□□□ -0.45
LINC00339-212ENST00000642072 PUS7Q96PZ0 661 aaKnown RBP12.24□□□□□ -0.45
LINC00339-212ENST00000642072 DOT1LQ8TEK3 1739 aa12.23□□□□□ -0.45
LINC00339-212ENST00000642072 MEGF6O75095 1541 aa12.23□□□□□ -0.45
LINC00339-212ENST00000642072 DDX54Q8TDD1 881 aaKnown RBP12.23□□□□□ -0.45
LINC00339-212ENST00000642072 CARD11Q9BXL7 1154 aa12.23□□□□□ -0.45
LINC00339-212ENST00000642072 MAP3K19Q56UN5 1328 aa12.22□□□□□ -0.45
LINC00339-212ENST00000642072 KCNQ4P56696 695 aa12.22□□□□□ -0.45
LINC00339-212ENST00000642072 NLGN2Q8NFZ4 835 aa12.22□□□□□ -0.45
LINC00339-212ENST00000642072 TERF2IPQ9NYB0 399 aa12.22□□□□□ -0.45
LINC00339-212ENST00000642072 SENP3-EIF4A1A0A087X0R7 540 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms