RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 ATP7BP35670 1465 aa13.08□□□□□ -0.32
PHGDH-228ENST00000641847 ABTB2Q8N961 1025 aa13.07□□□□□ -0.32
PHGDH-228ENST00000641847 CPDO75976 1380 aa13.07□□□□□ -0.32
PHGDH-228ENST00000641847 SLC15A2Q16348 729 aa13.06□□□□□ -0.32
PHGDH-228ENST00000641847 NUDT16Q96DE0 195 aaKnown RBP13.06□□□□□ -0.32
PHGDH-228ENST00000641847 ARXQ96QS3 562 aa13.06□□□□□ -0.32
PHGDH-228ENST00000641847 PDGFDQ9GZP0 370 aaPredicted RBP13.06□□□□□ -0.32
PHGDH-228ENST00000641847 TMF1P82094 1093 aa13.05□□□□□ -0.32
PHGDH-228ENST00000641847 CDCA7Q9BWT1 371 aaPredicted RBP13.05□□□□□ -0.32
PHGDH-228ENST00000641847 CCDC7Q96M83 1385 aa13.05□□□□□ -0.32
PHGDH-228ENST00000641847 NLRP13Q86W25 1043 aa13.04□□□□□ -0.32
PHGDH-228ENST00000641847 KIF7Q2M1P5 1343 aa13.04□□□□□ -0.32
PHGDH-228ENST00000641847 WASHC2AQ641Q2 1341 aa13.04□□□□□ -0.32
PHGDH-228ENST00000641847 RGPD3A6NKT7 1758 aaPredicted RBP13.03□□□□□ -0.32
PHGDH-228ENST00000641847 RGPD4Q7Z3J3 1758 aa13.03□□□□□ -0.32
PHGDH-228ENST00000641847 TXNRD1Q16881 649 aa13.03□□□□□ -0.32
PHGDH-228ENST00000641847 CRB1P82279 1406 aa13.03□□□□□ -0.32
PHGDH-228ENST00000641847 MYOM1P52179 1685 aa13.02□□□□□ -0.32
PHGDH-228ENST00000641847 CRYBG1Q9Y4K1 1723 aa13.02□□□□□ -0.32
PHGDH-228ENST00000641847 ZBTB7CA1YPR0 619 aa13.02□□□□□ -0.33
PHGDH-228ENST00000641847 SLC24A1O60721 1099 aa13.02□□□□□ -0.33
PHGDH-228ENST00000641847 GCP02774 474 aa13.02□□□□□ -0.33
PHGDH-228ENST00000641847 TOM1L2Q6ZVM7 507 aa13.02□□□□□ -0.33
PHGDH-228ENST00000641847 PROM2Q8N271 834 aa13.02□□□□□ -0.33
PHGDH-228ENST00000641847 POLR3GLQ9BT43 218 aa13.02□□□□□ -0.33
PHGDH-228ENST00000641847 CCDC61Q9Y6R9 512 aa13.02□□□□□ -0.33
PHGDH-228ENST00000641847 EVC2Q86UK5 1308 aa13.02□□□□□ -0.33
PHGDH-228ENST00000641847 CASZ1Q86V15 1759 aa13.02□□□□□ -0.33
PHGDH-228ENST00000641847 CHD4Q14839 1912 aa13.01□□□□□ -0.33
PHGDH-228ENST00000641847 PELP1Q8IZL8 1130 aaKnown RBP13.01□□□□□ -0.33
PHGDH-228ENST00000641847 ACEP12821 1306 aa13.01□□□□□ -0.33
PHGDH-228ENST00000641847 MAP3K5Q99683 1374 aa13.01□□□□□ -0.33
PHGDH-228ENST00000641847 PHRF1Q9P1Y6 1649 aaKnown RBP13□□□□□ -0.33
PHGDH-228ENST00000641847 PARP4Q9UKK3 1724 aaKnown RBP12.99□□□□□ -0.33
PHGDH-228ENST00000641847 COL5A2P05997 1499 aaPredicted RBP12.99□□□□□ -0.33
PHGDH-228ENST00000641847 USP19O94966 1318 aa12.99□□□□□ -0.33
PHGDH-228ENST00000641847 POLD1P28340 1107 aa12.99□□□□□ -0.33
PHGDH-228ENST00000641847 CDCA8Q53HL2 280 aa12.99□□□□□ -0.33
PHGDH-228ENST00000641847 KLHL34Q8N239 644 aa12.99□□□□□ -0.33
PHGDH-228ENST00000641847 SGIP1Q9BQI5 828 aa12.99□□□□□ -0.33
PHGDH-228ENST00000641847 CDK19Q9BWU1 502 aa12.99□□□□□ -0.33
PHGDH-228ENST00000641847 TOPAZ1Q8N9V7 1692 aa12.99□□□□□ -0.33
PHGDH-228ENST00000641847 BCL9O00512 1426 aa12.98□□□□□ -0.33
PHGDH-228ENST00000641847 POLR3AO14802 1390 aaPredicted RBP12.98□□□□□ -0.33
PHGDH-228ENST00000641847 EXOC5O00471 708 aa12.98□□□□□ -0.33
PHGDH-228ENST00000641847 SRPK2P78362 688 aaKnown RBP12.98□□□□□ -0.33
PHGDH-228ENST00000641847 PTF1AQ7RTS3 328 aa12.98□□□□□ -0.33
PHGDH-228ENST00000641847 MARCH10Q8NA82 808 aaPredicted RBP12.98□□□□□ -0.33
PHGDH-228ENST00000641847 CABP2Q9NPB3 220 aa12.98□□□□□ -0.33
PHGDH-228ENST00000641847 AATKQ6ZMQ8 1374 aa12.97□□□□□ -0.33
PHGDH-228ENST00000641847 ITSN1Q15811 1721 aa12.97□□□□□ -0.33
PHGDH-228ENST00000641847 PLEKHG3A1L390 1219 aa12.97□□□□□ -0.33
PHGDH-228ENST00000641847 GRIN3BO60391 1043 aa12.97□□□□□ -0.33
PHGDH-228ENST00000641847 CSB-PGBD3P0DP91 1061 aa12.95□□□□□ -0.34
PHGDH-228ENST00000641847 SLC16A10Q8TF71 515 aa12.95□□□□□ -0.34
PHGDH-228ENST00000641847 PUS7Q96PZ0 661 aaKnown RBP12.95□□□□□ -0.34
PHGDH-228ENST00000641847 LMO7Q8WWI1 1683 aa12.95□□□□□ -0.34
PHGDH-228ENST00000641847 WDR17Q8IZU2 1322 aa12.94□□□□□ -0.34
PHGDH-228ENST00000641847 PEAK1Q9H792 1746 aa12.94□□□□□ -0.34
PHGDH-228ENST00000641847 NLRP6P59044 892 aa12.94□□□□□ -0.34
PHGDH-228ENST00000641847 BRD4O60885 1362 aaPredicted RBP12.94□□□□□ -0.34
PHGDH-228ENST00000641847 DDX10Q13206 875 aaKnown RBP12.93□□□□□ -0.34
PHGDH-228ENST00000641847 PPIP5K1Q6PFW1 1433 aa12.93□□□□□ -0.34
PHGDH-228ENST00000641847 HSPA6P17066 643 aa12.92□□□□□ -0.34
PHGDH-228ENST00000641847 CARD10Q9BWT7 1032 aa12.92□□□□□ -0.34
PHGDH-228ENST00000641847 GPBP1L1Q9HC44 474 aaPredicted RBP12.92□□□□□ -0.34
PHGDH-228ENST00000641847 SBF2Q86WG5 1849 aa12.91□□□□□ -0.34
PHGDH-228ENST00000641847 TMC1Q8TDI8 760 aa12.91□□□□□ -0.34
PHGDH-228ENST00000641847 LRRC37A3O60309 1634 aa12.91□□□□□ -0.34
PHGDH-228ENST00000641847 AKAP12Q02952 1782 aa12.9□□□□□ -0.34
PHGDH-228ENST00000641847 KCNH5Q8NCM2 988 aa12.89□□□□□ -0.35
PHGDH-228ENST00000641847 ANKRD36BQ8N2N9 1353 aa12.89□□□□□ -0.35
PHGDH-228ENST00000641847 CD163L1Q9NR16 1453 aa12.89□□□□□ -0.35
PHGDH-228ENST00000641847 MON2Q7Z3U7 1717 aa12.88□□□□□ -0.35
PHGDH-228ENST00000641847 ACSBG1Q96GR2 724 aa12.88□□□□□ -0.35
PHGDH-228ENST00000641847 TFCP2L1Q9NZI6 479 aa12.88□□□□□ -0.35
PHGDH-228ENST00000641847 A0A1W2PP64 1363 aa12.88□□□□□ -0.35
PHGDH-228ENST00000641847 SLC27A3Q5K4L6 730 aa12.87□□□□□ -0.35
PHGDH-228ENST00000641847 SLC12A5Q9H2X9 1139 aa12.87□□□□□ -0.35
PHGDH-228ENST00000641847 PANK3Q9H999 370 aa12.87□□□□□ -0.35
PHGDH-228ENST00000641847 CABP1Q9NZU7 370 aa12.87□□□□□ -0.35
PHGDH-228ENST00000641847 AXIN2Q9Y2T1 843 aa12.87□□□□□ -0.35
PHGDH-228ENST00000641847 ZNF827Q17R98 1081 aa12.86□□□□□ -0.35
PHGDH-228ENST00000641847 DIEXFQ68CQ4 756 aaKnown RBP12.86□□□□□ -0.35
PHGDH-228ENST00000641847 USP6P35125 1406 aa12.86□□□□□ -0.35
PHGDH-228ENST00000641847 NSD3Q9BZ95 1437 aa12.86□□□□□ -0.35
PHGDH-228ENST00000641847 ATP10DQ9P241 1426 aa12.86□□□□□ -0.35
PHGDH-228ENST00000641847 HDGFL2Q7Z4V5 671 aaPredicted RBP12.85□□□□□ -0.35
PHGDH-228ENST00000641847 ARHGEF25Q86VW2 580 aa12.85□□□□□ -0.35
PHGDH-228ENST00000641847 NLGN2Q8NFZ4 835 aa12.85□□□□□ -0.35
PHGDH-228ENST00000641847 CPSF1Q10570 1443 aaKnown RBP12.85□□□□□ -0.35
PHGDH-228ENST00000641847 TNS2Q63HR2 1409 aa12.85□□□□□ -0.35
PHGDH-228ENST00000641847 TERF2IPQ9NYB0 399 aa12.84□□□□□ -0.35
PHGDH-228ENST00000641847 SHANK3Q9BYB0 1731 aa12.84□□□□□ -0.35
PHGDH-228ENST00000641847 KIF20BQ96Q89 1820 aa12.83□□□□□ -0.35
PHGDH-228ENST00000641847 KTN1Q86UP2 1357 aaKnown RBP12.83□□□□□ -0.36
PHGDH-228ENST00000641847 SOX12O15370 315 aa12.83□□□□□ -0.36
PHGDH-228ENST00000641847 MSH5O43196 834 aa12.83□□□□□ -0.36
PHGDH-228ENST00000641847 YBX3P16989 372 aaKnown RBP eCLIP12.83□□□□□ -0.36
PHGDH-228ENST00000641847 ZNF526Q8TF50 670 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms