RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GNAI3P08754 354 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 SAFBQ15424 915 aaKnown RBP eCLIP5.49□□□□□ -1.53
SCN1A-220ENST00000641603 NCOA1Q15788 1441 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 B4GALNT4Q76KP1 1039 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 SMC5Q8IY18 1101 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 PDZRN3Q9UPQ7 1066 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 CHMP3Q9Y3E7 222 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 SF3B2Q13435 895 aaKnown RBP5.49□□□□□ -1.53
SCN1A-220ENST00000641603 RGL3Q3MIN7 710 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 IMMTQ16891 758 aaKnown RBP5.49□□□□□ -1.53
SCN1A-220ENST00000641603 DNAJC21Q5F1R6 531 aaKnown RBP5.49□□□□□ -1.53
SCN1A-220ENST00000641603 DDX12PQ92771 950 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 GBP6Q6ZN66 633 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 TIAM1Q13009 1591 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 KRT32Q14532 448 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 SUDS3Q9H7L9 328 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-220ENST00000641603 FOXD4L1Q9NU39 408 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 VPS37CA5D8V6 355 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-220ENST00000641603 ERICH4A6NGS2 130 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 KIF5CO60282 957 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 HSPA4P34932 840 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 RNF214Q8ND24 703 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 MYO1BO43795 1136 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 ARHGAP25P42331 645 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 CEP120Q8N960 986 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 ERO1AQ96HE7 468 aa5.49□□□□□ -1.53
SCN1A-220ENST00000641603 BMP2KLQ5H9B9 411 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 PPFIBP1Q86W92 1011 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 ANO2Q9NQ90 1003 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 AQRO60306 1485 aaKnown RBP eCLIP5.48□□□□□ -1.53
SCN1A-220ENST00000641603 ZBTB7CA1YPR0 619 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 TPRNQ4KMQ1 711 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 ARFGAP2Q8N6H7 521 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 CCDC9Q9Y3X0 531 aaKnown RBP5.48□□□□□ -1.53
SCN1A-220ENST00000641603 OPA1O60313 960 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 UBE2HP62256 183 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 TRDNQ13061 729 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 NBPF11Q86T75 865 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 EBAG9O00559 213 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 RPAINQ86UA6 219 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 TBC1D2Q9BYX2 928 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 GTF2F1P35269 517 aaKnown RBP eCLIP5.48□□□□□ -1.53
SCN1A-220ENST00000641603 ANAPC15P60006 121 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 PLIN1O60240 522 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 ERCC3P19447 782 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 MVPQ14764 893 aaKnown RBP5.48□□□□□ -1.53
SCN1A-220ENST00000641603 TNPO1Q92973 898 aaKnown RBP5.48□□□□□ -1.53
SCN1A-220ENST00000641603 FAM200AQ8TCP9 573 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 PIBF1Q8WXW3 757 aa5.48□□□□□ -1.53
SCN1A-220ENST00000641603 XBP1P17861 261 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 SH2D4BQ5SQS7 431 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 FAM114A1Q8IWE2 563 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 CLIP2Q9UDT6 1046 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 CPLX1O14810 134 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 SMC1AQ14683 1233 aaKnown RBP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 EIF5P55010 431 aaKnown RBP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 ZNF445P59923 1031 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 XPCQ01831 940 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 CKAP4Q07065 602 aaKnown RBP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 CYP46A1Q9Y6A2 500 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 RASSF8Q8NHQ8 419 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 UPF3BQ9BZI7 483 aaKnown RBP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 ST20-MTHFSA0A0A6YYL1 179 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 NEK4P51957 841 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 ARHGAP29Q52LW3 1261 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 RPAP2Q8IXW5 612 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 CNTROBQ8N137 903 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 STMN4Q9H169 189 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 PANK3Q9H999 370 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 CEP135Q66GS9 1140 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 NSRP1Q9H0G5 558 aaKnown RBP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 SLMAPQ14BN4 828 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 PPP1R9BQ96SB3 815 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 TRIM34Q9BYJ4 488 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 USH1CQ9Y6N9 552 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 ZMYM4Q5VZL5 1548 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 CECR2Q9BXF3 1484 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 CCDC181Q5TID7 509 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 FHOD3Q2V2M9 1422 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 NPM1P06748 294 aaKnown RBP eCLIP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 CCDC30Q5VVM6 783 aa5.47□□□□□ -1.53
SCN1A-220ENST00000641603 NAA15Q9BXJ9 866 aaKnown RBP5.47□□□□□ -1.53
SCN1A-220ENST00000641603 APAF1O14727 1248 aa5.46□□□□□ -1.53
SCN1A-220ENST00000641603 RNF168Q8IYW5 571 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-220ENST00000641603 GPATCH11Q8N954 259 aa5.46□□□□□ -1.53
SCN1A-220ENST00000641603 NCOA2Q15596 1464 aa5.46□□□□□ -1.53
SCN1A-220ENST00000641603 SNW1Q13573 536 aaKnown RBP5.46□□□□□ -1.53
SCN1A-220ENST00000641603 RNF123Q5XPI4 1314 aa5.46□□□□□ -1.53
SCN1A-220ENST00000641603 CLSTN1O94985 981 aa5.46□□□□□ -1.53
SCN1A-220ENST00000641603 WDR97A6NE52 1622 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 SYCE3A1L190 88 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 STIM1Q13586 685 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 CCDC196A0A1B0GTZ2 297 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 CASQ1P31415 396 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 MAP2K2P36507 400 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 CHD1LQ86WJ1 897 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 PYM1Q9BRP8 204 aaKnown RBP5.46□□□□□ -1.54
SCN1A-220ENST00000641603 PRDM10Q9NQV6 1147 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 KIF3CO14782 793 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 BAG4O95429 457 aaKnown RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms