RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CCDC136Q96JN2 1154 aa24.03■■□□□ 1.44
CLN3-263ENST00000637871 SOX12O15370 315 aa24.02■■□□□ 1.44
CLN3-263ENST00000637871 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.02■■□□□ 1.44
CLN3-263ENST00000637871 OVOS2A0A0J9YW53 1432 aa24.02■■□□□ 1.44
CLN3-263ENST00000637871 OVOS2Q6IE36 1432 aa24.02■■□□□ 1.44
CLN3-263ENST00000637871 LRP6O75581 1613 aa24.02■■□□□ 1.44
CLN3-263ENST00000637871 USP54Q70EL1 1684 aa24.02■■□□□ 1.44
CLN3-263ENST00000637871 SENP3-EIF4A1A0A087X0R7 540 aa24.02■■□□□ 1.44
CLN3-263ENST00000637871 B4GALNT3Q6L9W6 998 aa24.02■■□□□ 1.44
CLN3-263ENST00000637871 ANKRD26Q9UPS8 1709 aa24.02■■□□□ 1.43
CLN3-263ENST00000637871 USP19O94966 1318 aa23.99■■□□□ 1.43
CLN3-263ENST00000637871 CCDC27Q2M243 656 aa23.99■■□□□ 1.43
CLN3-263ENST00000637871 USP31Q70CQ4 1352 aa23.99■■□□□ 1.43
CLN3-263ENST00000637871 PNNQ9H307 717 aaKnown RBP23.99■■□□□ 1.43
CLN3-263ENST00000637871 SLIT3O75094 1523 aa23.98■■□□□ 1.43
CLN3-263ENST00000637871 CCDC146Q8IYE0 955 aa23.98■■□□□ 1.43
CLN3-263ENST00000637871 FBLN1P23142 703 aa23.97■■□□□ 1.43
CLN3-263ENST00000637871 HAP1P54257 671 aaPredicted RBP23.97■■□□□ 1.43
CLN3-263ENST00000637871 ADAMTS2O95450 1211 aa23.96■■□□□ 1.43
CLN3-263ENST00000637871 TNNT2P45379 298 aaPredicted RBP23.96■■□□□ 1.43
CLN3-263ENST00000637871 COG3Q96JB2 828 aa23.96■■□□□ 1.43
CLN3-263ENST00000637871 WDR63Q8IWG1 891 aa23.95■■□□□ 1.43
CLN3-263ENST00000637871 SPATA31A6Q5VVP1 1343 aa23.95■■□□□ 1.42
CLN3-263ENST00000637871 NFAT5O94916 1531 aa23.94■■□□□ 1.42
CLN3-263ENST00000637871 PHF23Q9BUL5 403 aaPredicted RBP23.94■■□□□ 1.42
CLN3-263ENST00000637871 GCP02774 474 aa23.93■■□□□ 1.42
CLN3-263ENST00000637871 ZC3H6P61129 1189 aaKnown RBP23.93■■□□□ 1.42
CLN3-263ENST00000637871 ZBTB7CA1YPR0 619 aa23.92■■□□□ 1.42
CLN3-263ENST00000637871 WWC1Q8IX03 1113 aa23.92■■□□□ 1.42
CLN3-263ENST00000637871 LTN1O94822 1766 aa23.9■■□□□ 1.42
CLN3-263ENST00000637871 KIAA0232Q92628 1395 aa23.9■■□□□ 1.42
CLN3-263ENST00000637871 TCP11L2Q8N4U5 519 aa23.9■■□□□ 1.42
CLN3-263ENST00000637871 CHRNA2Q15822 529 aa23.88■■□□□ 1.41
CLN3-263ENST00000637871 EXOC6Q8TAG9 804 aa23.88■■□□□ 1.41
CLN3-263ENST00000637871 RBM19Q9Y4C8 960 aaKnown RBP23.88■■□□□ 1.41
CLN3-263ENST00000637871 U2AF1L5P0DN76 240 aaPredicted RBP23.88■■□□□ 1.41
CLN3-263ENST00000637871 U2AF1Q01081 240 aaKnown RBP eCLIP23.88■■□□□ 1.41
CLN3-263ENST00000637871 RRS1Q15050 365 aaKnown RBP23.87■■□□□ 1.41
CLN3-263ENST00000637871 MEX3CQ5U5Q3 659 aaKnown RBP23.87■■□□□ 1.41
CLN3-263ENST00000637871 COL3A1P02461 1466 aaPredicted RBP23.86■■□□□ 1.41
CLN3-263ENST00000637871 PLCH1Q4KWH8 1693 aa23.85■■□□□ 1.41
CLN3-263ENST00000637871 DIAPH1O60610 1272 aaKnown RBP23.85■■□□□ 1.41
CLN3-263ENST00000637871 KCNH5Q8NCM2 988 aa23.85■■□□□ 1.41
CLN3-263ENST00000637871 C8orf37Q96NL8 207 aa23.85■■□□□ 1.41
CLN3-263ENST00000637871 AATKQ6ZMQ8 1374 aa23.85■■□□□ 1.41
CLN3-263ENST00000637871 PRDM11Q9NQV5 511 aa23.84■■□□□ 1.41
CLN3-263ENST00000637871 PEAK1Q9H792 1746 aa23.84■■□□□ 1.41
CLN3-263ENST00000637871 MAP2P11137 1827 aaKnown RBP23.83■■□□□ 1.41
CLN3-263ENST00000637871 FAM83GA6ND36 823 aa23.83■■□□□ 1.41
CLN3-263ENST00000637871 RGPD5Q99666 1765 aa23.82■■□□□ 1.4
CLN3-263ENST00000637871 CT47B1P0C2W7 299 aaPredicted RBP23.82■■□□□ 1.4
CLN3-263ENST00000637871 MYH16Q9H6N6 1097 aa23.82■■□□□ 1.4
CLN3-263ENST00000637871 EMILIN1Q9Y6C2 1016 aa23.82■■□□□ 1.4
CLN3-263ENST00000637871 MAP3K19Q56UN5 1328 aa23.82■■□□□ 1.4
CLN3-263ENST00000637871 CPDO75976 1380 aa23.82■■□□□ 1.4
CLN3-263ENST00000637871 COL14A1Q05707 1796 aaKnown RBP23.82■■□□□ 1.4
CLN3-263ENST00000637871 ARHGEF25Q86VW2 580 aa23.81■■□□□ 1.4
CLN3-263ENST00000637871 LMO7Q8WWI1 1683 aa23.81■■□□□ 1.4
CLN3-263ENST00000637871 COL18A1P39060 1754 aa23.81■■□□□ 1.4
CLN3-263ENST00000637871 FCHSD2O94868 740 aa23.81■■□□□ 1.4
CLN3-263ENST00000637871 IL16Q14005 1332 aa23.79■■□□□ 1.4
CLN3-263ENST00000637871 MAPK8IP3Q9UPT6 1336 aa23.79■■□□□ 1.4
CLN3-263ENST00000637871 PLEKHF1Q96S99 279 aa23.79■■□□□ 1.4
CLN3-263ENST00000637871 PPM1GO15355 546 aaPredicted RBP23.78■■□□□ 1.4
CLN3-263ENST00000637871 NGLY1Q96IV0 654 aa23.78■■□□□ 1.4
CLN3-263ENST00000637871 SPINK5Q9NQ38 1064 aaPredicted RBP23.78■■□□□ 1.4
CLN3-263ENST00000637871 CAMTA1Q9Y6Y1 1673 aa23.78■■□□□ 1.4
CLN3-263ENST00000637871 NEFMP07197 916 aa23.77■■□□□ 1.4
CLN3-263ENST00000637871 AAMPQ13685 434 aa23.77■■□□□ 1.4
CLN3-263ENST00000637871 PDE3AQ14432 1141 aa23.77■■□□□ 1.4
CLN3-263ENST00000637871 CRBNQ96SW2 442 aa23.77■■□□□ 1.4
CLN3-263ENST00000637871 AXIN2Q9Y2T1 843 aa23.77■■□□□ 1.4
CLN3-263ENST00000637871 U2SURPO15042 1029 aaKnown RBP23.77■■□□□ 1.4
CLN3-263ENST00000637871 POLKQ9UBT6 870 aa23.77■■□□□ 1.4
CLN3-263ENST00000637871 NRAPQ86VF7 1730 aa23.77■■□□□ 1.4
CLN3-263ENST00000637871 PLIN1O60240 522 aa23.76■■□□□ 1.39
CLN3-263ENST00000637871 BTG4Q9NY30 223 aa23.76■■□□□ 1.39
CLN3-263ENST00000637871 SLIT2O94813 1529 aa23.75■■□□□ 1.39
CLN3-263ENST00000637871 AFF2P51816 1311 aa23.75■■□□□ 1.39
CLN3-263ENST00000637871 AMPHP49418 695 aa23.74■■□□□ 1.39
CLN3-263ENST00000637871 FANCIQ9NVI1 1328 aa23.74■■□□□ 1.39
CLN3-263ENST00000637871 NWD2Q9ULI1 1742 aa23.74■■□□□ 1.39
CLN3-263ENST00000637871 TCERG1O14776 1098 aaKnown RBP23.73■■□□□ 1.39
CLN3-263ENST00000637871 TMPOP42166 694 aaKnown RBP23.73■■□□□ 1.39
CLN3-263ENST00000637871 CDK12Q9NYV4 1490 aaPredicted RBP23.73■■□□□ 1.39
CLN3-263ENST00000637871 HOXC9P31274 260 aa23.73■■□□□ 1.39
CLN3-263ENST00000637871 NEUROD2Q15784 382 aa23.72■■□□□ 1.39
CLN3-263ENST00000637871 BCL9LQ86UU0 1499 aa23.72■■□□□ 1.39
CLN3-263ENST00000637871 HSP90AB2PQ58FF8 381 aa23.71■■□□□ 1.39
CLN3-263ENST00000637871 STRN4Q9NRL3 753 aa23.71■■□□□ 1.39
CLN3-263ENST00000637871 COL5A2P05997 1499 aaPredicted RBP23.71■■□□□ 1.39
CLN3-263ENST00000637871 FLT4P35916 1363 aa23.7■■□□□ 1.39
CLN3-263ENST00000637871 MS4A1P11836 297 aa23.7■■□□□ 1.39
CLN3-263ENST00000637871 IP6K1Q92551 441 aa23.7■■□□□ 1.39
CLN3-263ENST00000637871 LTV1Q96GA3 475 aaPredicted RBP23.7■■□□□ 1.39
CLN3-263ENST00000637871 RTL1A6NKG5 1358 aa23.7■■□□□ 1.38
CLN3-263ENST00000637871 FNBP4Q8N3X1 1017 aaPredicted RBP23.7■■□□□ 1.38
CLN3-263ENST00000637871 USP21Q9UK80 565 aa23.7■■□□□ 1.38
CLN3-263ENST00000637871 RRP7AQ9Y3A4 280 aaKnown RBP23.7■■□□□ 1.38
CLN3-263ENST00000637871 ABCC6O95255 1503 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms