RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 USP54Q70EL1 1684 aa19.28■□□□□ 0.68
PNKP-228ENST00000637325 BARGINQ6ZT62 677 aa19.28■□□□□ 0.68
PNKP-228ENST00000637325 LTN1O94822 1766 aa19.28■□□□□ 0.68
PNKP-228ENST00000637325 TOM1L2Q6ZVM7 507 aa19.27■□□□□ 0.68
PNKP-228ENST00000637325 THRAP3Q9Y2W1 955 aaKnown RBP19.27■□□□□ 0.68
PNKP-228ENST00000637325 CRB1P82279 1406 aa19.26■□□□□ 0.67
PNKP-228ENST00000637325 NFAT5O94916 1531 aa19.26■□□□□ 0.67
PNKP-228ENST00000637325 AXIN2Q9Y2T1 843 aa19.26■□□□□ 0.67
PNKP-228ENST00000637325 CSB-PGBD3P0DP91 1061 aa19.25■□□□□ 0.67
PNKP-228ENST00000637325 PDE3BQ13370 1112 aa19.25■□□□□ 0.67
PNKP-228ENST00000637325 FAM182BQ5T319 152 aa19.25■□□□□ 0.67
PNKP-228ENST00000637325 ANKRD36BQ8N2N9 1353 aa19.24■□□□□ 0.67
PNKP-228ENST00000637325 WDR17Q8IZU2 1322 aa19.23■□□□□ 0.67
PNKP-228ENST00000637325 RGPD1P0DJD0 1748 aa19.22■□□□□ 0.67
PNKP-228ENST00000637325 COG3Q96JB2 828 aa19.22■□□□□ 0.67
PNKP-228ENST00000637325 FAM196AQ6ZSG2 479 aa19.21■□□□□ 0.67
PNKP-228ENST00000637325 DEFB132Q7Z7B7 95 aa19.21■□□□□ 0.67
PNKP-228ENST00000637325 PARP4Q9UKK3 1724 aaKnown RBP19.21■□□□□ 0.67
PNKP-228ENST00000637325 WNK3Q9BYP7 1800 aa19.21■□□□□ 0.67
PNKP-228ENST00000637325 ABCC6O95255 1503 aa19.2■□□□□ 0.66
PNKP-228ENST00000637325 EIF4G2P78344 907 aaKnown RBP eCLIP19.2■□□□□ 0.66
PNKP-228ENST00000637325 OVOS2A0A0J9YW53 1432 aa19.19■□□□□ 0.66
PNKP-228ENST00000637325 OVOS2Q6IE36 1432 aa19.19■□□□□ 0.66
PNKP-228ENST00000637325 BAG6P46379 1132 aa19.19■□□□□ 0.66
PNKP-228ENST00000637325 POLR3GLQ9BT43 218 aa19.19■□□□□ 0.66
PNKP-228ENST00000637325 KAT6BQ8WYB5 2073 aa19.19■□□□□ 0.66
PNKP-228ENST00000637325 KIF20BQ96Q89 1820 aa19.18■□□□□ 0.66
PNKP-228ENST00000637325 CARD10Q9BWT7 1032 aa19.18■□□□□ 0.66
PNKP-228ENST00000637325 MYOM1P52179 1685 aa19.17■□□□□ 0.66
PNKP-228ENST00000637325 HSPA5P11021 654 aaKnown RBP19.16■□□□□ 0.66
PNKP-228ENST00000637325 DDB1Q16531 1140 aa19.16■□□□□ 0.66
PNKP-228ENST00000637325 CDCA7Q9BWT1 371 aaPredicted RBP19.16■□□□□ 0.66
PNKP-228ENST00000637325 TRIM37O94972 964 aa19.15■□□□□ 0.66
PNKP-228ENST00000637325 TNS1Q9HBL0 1735 aaKnown RBP19.14■□□□□ 0.66
PNKP-228ENST00000637325 FYB1O15117 783 aa19.14■□□□□ 0.65
PNKP-228ENST00000637325 ANKRD24Q8TF21 1146 aa19.14■□□□□ 0.65
PNKP-228ENST00000637325 GGNBP2Q9H3C7 697 aa19.14■□□□□ 0.65
PNKP-228ENST00000637325 NLRP2Q9NX02 1062 aa19.14■□□□□ 0.65
PNKP-228ENST00000637325 CCDC7Q96M83 1385 aa19.14■□□□□ 0.65
PNKP-228ENST00000637325 LRRC37A3O60309 1634 aa19.14■□□□□ 0.65
PNKP-228ENST00000637325 AMPHP49418 695 aa19.13■□□□□ 0.65
PNKP-228ENST00000637325 IP6K1Q92551 441 aa19.13■□□□□ 0.65
PNKP-228ENST00000637325 ERBB3P21860 1342 aa19.13■□□□□ 0.65
PNKP-228ENST00000637325 SBF2Q86WG5 1849 aa19.12■□□□□ 0.65
PNKP-228ENST00000637325 C11orf95C9JLR9 678 aaPredicted RBP19.12■□□□□ 0.65
PNKP-228ENST00000637325 EN1Q05925 392 aaPredicted RBP19.12■□□□□ 0.65
PNKP-228ENST00000637325 LTV1Q96GA3 475 aaPredicted RBP19.12■□□□□ 0.65
PNKP-228ENST00000637325 NSD3Q9BZ95 1437 aa19.1■□□□□ 0.65
PNKP-228ENST00000637325 MAP3K19Q56UN5 1328 aa19.1■□□□□ 0.65
PNKP-228ENST00000637325 EXOC5O00471 708 aa19.1■□□□□ 0.65
PNKP-228ENST00000637325 APBA3O96018 575 aa19.1■□□□□ 0.65
PNKP-228ENST00000637325 FBLN1P23142 703 aa19.1■□□□□ 0.65
PNKP-228ENST00000637325 CARD14Q9BXL6 1004 aa19.1■□□□□ 0.65
PNKP-228ENST00000637325 FAM208AQ9UK61 1670 aaKnown RBP19.1■□□□□ 0.65
PNKP-228ENST00000637325 OVOS2A0A0G2JMS6 1433 aa19.09■□□□□ 0.65
PNKP-228ENST00000637325 RGPD2P0DJD1 1756 aa19.08■□□□□ 0.64
PNKP-228ENST00000637325 MAP2P11137 1827 aaKnown RBP19.07■□□□□ 0.64
PNKP-228ENST00000637325 HOXC9P31274 260 aa19.07■□□□□ 0.64
PNKP-228ENST00000637325 RRS1Q15050 365 aaKnown RBP19.07■□□□□ 0.64
PNKP-228ENST00000637325 PEAK1Q9H792 1746 aa19.07■□□□□ 0.64
PNKP-228ENST00000637325 DISP2A7MBM2 1401 aa19.07■□□□□ 0.64
PNKP-228ENST00000637325 IL2RBP14784 551 aa19.06■□□□□ 0.64
PNKP-228ENST00000637325 MARCH10Q8NA82 808 aaPredicted RBP19.06■□□□□ 0.64
PNKP-228ENST00000637325 CGNL1Q0VF96 1302 aa19.05■□□□□ 0.64
PNKP-228ENST00000637325 EZH2Q15910 746 aaKnown RBP19.05■□□□□ 0.64
PNKP-228ENST00000637325 RTL1A6NKG5 1358 aa19.04■□□□□ 0.64
PNKP-228ENST00000637325 CAMKK2Q96RR4 588 aa19.03■□□□□ 0.64
PNKP-228ENST00000637325 TNS2Q63HR2 1409 aa19.02■□□□□ 0.64
PNKP-228ENST00000637325 SMG6Q86US8 1419 aaKnown RBP19.01■□□□□ 0.63
PNKP-228ENST00000637325 ANKRD26Q9UPS8 1709 aa19.01■□□□□ 0.63
PNKP-228ENST00000637325 PANK3Q9H999 370 aa19.01■□□□□ 0.63
PNKP-228ENST00000637325 PARD3Q8TEW0 1356 aa19.01■□□□□ 0.63
PNKP-228ENST00000637325 BCL11BQ9C0K0 894 aaPredicted RBP19■□□□□ 0.63
PNKP-228ENST00000637325 PSDA5PKW4 1024 aaPredicted RBP18.99■□□□□ 0.63
PNKP-228ENST00000637325 PPM1GO15355 546 aaPredicted RBP18.99■□□□□ 0.63
PNKP-228ENST00000637325 FLT4P35916 1363 aa18.98■□□□□ 0.63
PNKP-228ENST00000637325 HSP90AB2PQ58FF8 381 aa18.98■□□□□ 0.63
PNKP-228ENST00000637325 BCL9O00512 1426 aa18.98■□□□□ 0.63
PNKP-228ENST00000637325 RREB1Q92766 1687 aa18.98■□□□□ 0.63
PNKP-228ENST00000637325 KIF24Q5T7B8 1368 aa18.97■□□□□ 0.63
PNKP-228ENST00000637325 INSRP06213 1382 aa18.96■□□□□ 0.63
PNKP-228ENST00000637325 NBPF14Q5TI25 921 aa18.96■□□□□ 0.63
PNKP-228ENST00000637325 DDX54Q8TDD1 881 aaKnown RBP18.96■□□□□ 0.63
PNKP-228ENST00000637325 EMILIN1Q9Y6C2 1016 aa18.96■□□□□ 0.63
PNKP-228ENST00000637325 NUP188Q5SRE5 1749 aa18.96■□□□□ 0.63
PNKP-228ENST00000637325 RGPD3A6NKT7 1758 aaPredicted RBP18.96■□□□□ 0.63
PNKP-228ENST00000637325 RGPD4Q7Z3J3 1758 aa18.96■□□□□ 0.63
PNKP-228ENST00000637325 TNNT2P45379 298 aaPredicted RBP18.95■□□□□ 0.62
PNKP-228ENST00000637325 R3HDM1Q15032 1099 aaKnown RBP18.95■□□□□ 0.62
PNKP-228ENST00000637325 NBPF6Q5VWK0 638 aa18.95■□□□□ 0.62
PNKP-228ENST00000637325 PTF1AQ7RTS3 328 aa18.95■□□□□ 0.62
PNKP-228ENST00000637325 ACSBG1Q96GR2 724 aa18.95■□□□□ 0.62
PNKP-228ENST00000637325 NBPF4Q96M43 638 aa18.95■□□□□ 0.62
PNKP-228ENST00000637325 PLSCR1O15162 318 aa18.94■□□□□ 0.62
PNKP-228ENST00000637325 USHBP1Q8N6Y0 703 aa18.94■□□□□ 0.62
PNKP-228ENST00000637325 NHSQ6T4R5 1651 aa18.93■□□□□ 0.62
PNKP-228ENST00000637325 RAPGEF4Q8WZA2 1011 aa18.93■□□□□ 0.62
PNKP-228ENST00000637325 KNSTRNQ9Y448 316 aa18.93■□□□□ 0.62
PNKP-228ENST00000637325 KCNQ2O43526 872 aa18.92■□□□□ 0.62
PNKP-228ENST00000637325 ZCRB1Q8TBF4 217 aaKnown RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms