RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 ANO8Q9HCE9 1232 aaPredicted RBP16.44■□□□□ 0.22
CLN3-257ENST00000637110 TOPAZ1Q8N9V7 1692 aa16.43■□□□□ 0.22
CLN3-257ENST00000637110 PTGER2P43116 358 aa16.43■□□□□ 0.22
CLN3-257ENST00000637110 PEAK1Q9H792 1746 aa16.42■□□□□ 0.22
CLN3-257ENST00000637110 SYT17Q9BSW7 474 aa16.42■□□□□ 0.22
CLN3-257ENST00000637110 FHDC1Q9C0D6 1143 aaPredicted RBP16.42■□□□□ 0.22
CLN3-257ENST00000637110 LMO7Q8WWI1 1683 aa16.42■□□□□ 0.22
CLN3-257ENST00000637110 CPDO75976 1380 aa16.41■□□□□ 0.22
CLN3-257ENST00000637110 ATF5Q9Y2D1 282 aaPredicted RBP16.41■□□□□ 0.22
CLN3-257ENST00000637110 GIGYF1O75420 1035 aaPredicted RBP16.4■□□□□ 0.22
CLN3-257ENST00000637110 STK32BQ9NY57 414 aa16.4■□□□□ 0.22
CLN3-257ENST00000637110 NLRP13Q86W25 1043 aa16.39■□□□□ 0.21
CLN3-257ENST00000637110 PDGFDQ9GZP0 370 aaPredicted RBP16.39■□□□□ 0.21
CLN3-257ENST00000637110 MTFR1LQ9H019 292 aa16.39■□□□□ 0.21
CLN3-257ENST00000637110 CRB1P82279 1406 aa16.38■□□□□ 0.21
CLN3-257ENST00000637110 ZBTB7CA1YPR0 619 aa16.38■□□□□ 0.21
CLN3-257ENST00000637110 CCER1Q8TC90 406 aaPredicted RBP16.38■□□□□ 0.21
CLN3-257ENST00000637110 TMC1Q8TDI8 760 aa16.38■□□□□ 0.21
CLN3-257ENST00000637110 LRRC37A3O60309 1634 aa16.37■□□□□ 0.21
CLN3-257ENST00000637110 COL5A2P05997 1499 aaPredicted RBP16.37■□□□□ 0.21
CLN3-257ENST00000637110 NLRP6P59044 892 aa16.37■□□□□ 0.21
CLN3-257ENST00000637110 DDB1Q16531 1140 aa16.37■□□□□ 0.21
CLN3-257ENST00000637110 ZNF692Q9BU19 519 aaPredicted RBP16.37■□□□□ 0.21
CLN3-257ENST00000637110 AKAP12Q02952 1782 aa16.36■□□□□ 0.21
CLN3-257ENST00000637110 USP6P35125 1406 aa16.36■□□□□ 0.21
CLN3-257ENST00000637110 SLC15A2Q16348 729 aa16.35■□□□□ 0.21
CLN3-257ENST00000637110 USP19O94966 1318 aa16.35■□□□□ 0.21
CLN3-257ENST00000637110 BRD4O60885 1362 aaPredicted RBP16.35■□□□□ 0.21
CLN3-257ENST00000637110 ST20-MTHFSA0A0A6YYL1 179 aa16.34■□□□□ 0.21
CLN3-257ENST00000637110 PROM2Q8N271 834 aa16.34■□□□□ 0.21
CLN3-257ENST00000637110 ARXQ96QS3 562 aa16.34■□□□□ 0.21
CLN3-257ENST00000637110 MAP3K5Q99683 1374 aa16.34■□□□□ 0.21
CLN3-257ENST00000637110 SBNO2Q9Y2G9 1366 aa16.34■□□□□ 0.21
CLN3-257ENST00000637110 GCP02774 474 aa16.33■□□□□ 0.2
CLN3-257ENST00000637110 GPR162Q16538 588 aa16.33■□□□□ 0.2
CLN3-257ENST00000637110 CLSPNQ9HAW4 1339 aa16.33■□□□□ 0.2
CLN3-257ENST00000637110 BCL9O00512 1426 aa16.33■□□□□ 0.2
CLN3-257ENST00000637110 TXNRD1Q16881 649 aa16.32■□□□□ 0.2
CLN3-257ENST00000637110 CEP350Q5VT06 3117 aa16.32■□□□□ 0.2
CLN3-257ENST00000637110 HDGFL2Q7Z4V5 671 aaPredicted RBP16.32■□□□□ 0.2
CLN3-257ENST00000637110 KTN1Q86UP2 1357 aaKnown RBP16.32■□□□□ 0.2
CLN3-257ENST00000637110 SGIP1Q9BQI5 828 aa16.32■□□□□ 0.2
CLN3-257ENST00000637110 CDCA7Q9BWT1 371 aaPredicted RBP16.32■□□□□ 0.2
CLN3-257ENST00000637110 TIMELESSQ9UNS1 1208 aa16.32■□□□□ 0.2
CLN3-257ENST00000637110 WNK3Q9BYP7 1800 aa16.31■□□□□ 0.2
CLN3-257ENST00000637110 TTC21BQ7Z4L5 1316 aa16.31■□□□□ 0.2
CLN3-257ENST00000637110 SOX12O15370 315 aa16.31■□□□□ 0.2
CLN3-257ENST00000637110 AATKQ6ZMQ8 1374 aa16.3■□□□□ 0.2
CLN3-257ENST00000637110 SLC24A1O60721 1099 aa16.3■□□□□ 0.2
CLN3-257ENST00000637110 TOM1L2Q6ZVM7 507 aa16.3■□□□□ 0.2
CLN3-257ENST00000637110 PTF1AQ7RTS3 328 aa16.3■□□□□ 0.2
CLN3-257ENST00000637110 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.3■□□□□ 0.2
CLN3-257ENST00000637110 SLC12A5Q9H2X9 1139 aa16.3■□□□□ 0.2
CLN3-257ENST00000637110 TTC21AQ8NDW8 1320 aa16.28■□□□□ 0.2
CLN3-257ENST00000637110 MARCH10Q8NA82 808 aaPredicted RBP16.28■□□□□ 0.2
CLN3-257ENST00000637110 TERF2IPQ9NYB0 399 aa16.28■□□□□ 0.2
CLN3-257ENST00000637110 USP47Q96K76 1375 aa16.27■□□□□ 0.2
CLN3-257ENST00000637110 TMF1P82094 1093 aa16.27■□□□□ 0.2
CLN3-257ENST00000637110 TESK2Q96S53 571 aa16.27■□□□□ 0.2
CLN3-257ENST00000637110 KCNH5Q8NCM2 988 aa16.26■□□□□ 0.19
CLN3-257ENST00000637110 CPSF1Q10570 1443 aaKnown RBP16.26■□□□□ 0.19
CLN3-257ENST00000637110 PUS7Q96PZ0 661 aaKnown RBP16.25■□□□□ 0.19
CLN3-257ENST00000637110 WDR17Q8IZU2 1322 aa16.24■□□□□ 0.19
CLN3-257ENST00000637110 NME9Q86XW9 330 aa16.24■□□□□ 0.19
CLN3-257ENST00000637110 PELP1Q8IZL8 1130 aaKnown RBP16.24■□□□□ 0.19
CLN3-257ENST00000637110 PIK3C2AO00443 1686 aa16.24■□□□□ 0.19
CLN3-257ENST00000637110 SHANK3Q9BYB0 1731 aa16.23■□□□□ 0.19
CLN3-257ENST00000637110 EXOC5O00471 708 aa16.22■□□□□ 0.19
CLN3-257ENST00000637110 POLD1P28340 1107 aa16.22■□□□□ 0.19
CLN3-257ENST00000637110 CDCA8Q53HL2 280 aa16.22■□□□□ 0.19
CLN3-257ENST00000637110 KLHL34Q8N239 644 aa16.22■□□□□ 0.19
CLN3-257ENST00000637110 NHSQ6T4R5 1651 aa16.21■□□□□ 0.19
CLN3-257ENST00000637110 SLIT3O75094 1523 aa16.21■□□□□ 0.19
CLN3-257ENST00000637110 PAPPAQ13219 1627 aa16.21■□□□□ 0.19
CLN3-257ENST00000637110 CSB-PGBD3P0DP91 1061 aa16.21■□□□□ 0.19
CLN3-257ENST00000637110 MON2Q7Z3U7 1717 aa16.21■□□□□ 0.19
CLN3-257ENST00000637110 A0A1W2PP64 1363 aa16.21■□□□□ 0.19
CLN3-257ENST00000637110 GOLGB1Q14789 3259 aaKnown RBP16.21■□□□□ 0.19
CLN3-257ENST00000637110 COL18A1P39060 1754 aa16.21■□□□□ 0.18
CLN3-257ENST00000637110 SLC16A10Q8TF71 515 aa16.2■□□□□ 0.18
CLN3-257ENST00000637110 CARD10Q9BWT7 1032 aa16.2■□□□□ 0.18
CLN3-257ENST00000637110 CD163L1Q9NR16 1453 aa16.2■□□□□ 0.18
CLN3-257ENST00000637110 GRIN3BO60391 1043 aa16.19■□□□□ 0.18
CLN3-257ENST00000637110 POLR3GLQ9BT43 218 aa16.19■□□□□ 0.18
CLN3-257ENST00000637110 EDC4Q6P2E9 1401 aaKnown RBP16.19■□□□□ 0.18
CLN3-257ENST00000637110 ARHGEF25Q86VW2 580 aa16.18■□□□□ 0.18
CLN3-257ENST00000637110 TNS2Q63HR2 1409 aa16.18■□□□□ 0.18
CLN3-257ENST00000637110 KAT6BQ8WYB5 2073 aa16.17■□□□□ 0.18
CLN3-257ENST00000637110 QSER1Q2KHR3 1735 aa16.17■□□□□ 0.18
CLN3-257ENST00000637110 AXIN2Q9Y2T1 843 aa16.17■□□□□ 0.18
CLN3-257ENST00000637110 USP31Q70CQ4 1352 aa16.16■□□□□ 0.18
CLN3-257ENST00000637110 CCDC7Q96M83 1385 aa16.16■□□□□ 0.18
CLN3-257ENST00000637110 RGPD5Q99666 1765 aa16.16■□□□□ 0.18
CLN3-257ENST00000637110 COG3Q96JB2 828 aa16.16■□□□□ 0.18
CLN3-257ENST00000637110 BTAF1O14981 1849 aa16.15■□□□□ 0.18
CLN3-257ENST00000637110 HSPA6P17066 643 aa16.15■□□□□ 0.18
CLN3-257ENST00000637110 COL24A1Q17RW2 1714 aa16.15■□□□□ 0.18
CLN3-257ENST00000637110 ABCC6O95255 1503 aa16.14■□□□□ 0.18
CLN3-257ENST00000637110 ANKRD36BQ8N2N9 1353 aa16.14■□□□□ 0.17
CLN3-257ENST00000637110 EIF4G2P78344 907 aaKnown RBP eCLIP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms