RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 MON2Q7Z3U7 1717 aa25.2■■□□□ 1.62
CLN3-243ENST00000635973 CPSF1Q10570 1443 aaKnown RBP25.2■■□□□ 1.62
CLN3-243ENST00000635973 TNS1Q9HBL0 1735 aaKnown RBP25.19■■□□□ 1.62
CLN3-243ENST00000635973 PSDA5PKW4 1024 aaPredicted RBP25.18■■□□□ 1.62
CLN3-243ENST00000635973 HDGFL2Q7Z4V5 671 aaPredicted RBP25.18■■□□□ 1.62
CLN3-243ENST00000635973 POLR3GLQ9BT43 218 aa25.18■■□□□ 1.62
CLN3-243ENST00000635973 ZEB1P37275 1124 aaPredicted RBP25.17■■□□□ 1.62
CLN3-243ENST00000635973 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.17■■□□□ 1.62
CLN3-243ENST00000635973 NINLQ9Y2I6 1382 aa25.17■■□□□ 1.62
CLN3-243ENST00000635973 PARP4Q9UKK3 1724 aaKnown RBP25.16■■□□□ 1.62
CLN3-243ENST00000635973 COL18A1P39060 1754 aa25.16■■□□□ 1.62
CLN3-243ENST00000635973 RGPD5Q99666 1765 aa25.16■■□□□ 1.62
CLN3-243ENST00000635973 CSB-PGBD3P0DP91 1061 aa25.15■■□□□ 1.62
CLN3-243ENST00000635973 SLC12A5Q9H2X9 1139 aa25.15■■□□□ 1.62
CLN3-243ENST00000635973 APBA3O96018 575 aa25.14■■□□□ 1.62
CLN3-243ENST00000635973 ARHGEF25Q86VW2 580 aa25.14■■□□□ 1.62
CLN3-243ENST00000635973 LRP5O75197 1615 aa25.14■■□□□ 1.61
CLN3-243ENST00000635973 TERF2IPQ9NYB0 399 aa25.13■■□□□ 1.61
CLN3-243ENST00000635973 WDR17Q8IZU2 1322 aa25.12■■□□□ 1.61
CLN3-243ENST00000635973 DISP2A7MBM2 1401 aa25.12■■□□□ 1.61
CLN3-243ENST00000635973 C11orf95C9JLR9 678 aaPredicted RBP25.12■■□□□ 1.61
CLN3-243ENST00000635973 AXIN2Q9Y2T1 843 aa25.12■■□□□ 1.61
CLN3-243ENST00000635973 EZH2Q15910 746 aaKnown RBP25.11■■□□□ 1.61
CLN3-243ENST00000635973 DDB1Q16531 1140 aa25.11■■□□□ 1.61
CLN3-243ENST00000635973 A0A1W2PP64 1363 aa25.09■■□□□ 1.61
CLN3-243ENST00000635973 CD163L1Q9NR16 1453 aa25.09■■□□□ 1.61
CLN3-243ENST00000635973 WNK3Q9BYP7 1800 aa25.08■■□□□ 1.61
CLN3-243ENST00000635973 NME9Q86XW9 330 aa25.08■■□□□ 1.61
CLN3-243ENST00000635973 CDCA7Q9BWT1 371 aaPredicted RBP25.08■■□□□ 1.61
CLN3-243ENST00000635973 NFAT5O94916 1531 aa25.07■■□□□ 1.6
CLN3-243ENST00000635973 PARD3Q8TEW0 1356 aa25.07■■□□□ 1.6
CLN3-243ENST00000635973 USP31Q70CQ4 1352 aa25.06■■□□□ 1.6
CLN3-243ENST00000635973 OVOS2A0A0G2JMS6 1433 aa25.06■■□□□ 1.6
CLN3-243ENST00000635973 OVOS2A0A0J9YW53 1432 aa25.06■■□□□ 1.6
CLN3-243ENST00000635973 OVOS2Q6IE36 1432 aa25.06■■□□□ 1.6
CLN3-243ENST00000635973 EDC4Q6P2E9 1401 aaKnown RBP25.06■■□□□ 1.6
CLN3-243ENST00000635973 LRRC37A3O60309 1634 aa25.06■■□□□ 1.6
CLN3-243ENST00000635973 R3HDM1Q15032 1099 aaKnown RBP25.06■■□□□ 1.6
CLN3-243ENST00000635973 CAMKK2Q96RR4 588 aa25.06■■□□□ 1.6
CLN3-243ENST00000635973 ANKRD36BQ8N2N9 1353 aa25.05■■□□□ 1.6
CLN3-243ENST00000635973 LTN1O94822 1766 aa25.05■■□□□ 1.6
CLN3-243ENST00000635973 CARD10Q9BWT7 1032 aa25.05■■□□□ 1.6
CLN3-243ENST00000635973 USP54Q70EL1 1684 aa25.04■■□□□ 1.6
CLN3-243ENST00000635973 ABCC6O95255 1503 aa25.04■■□□□ 1.6
CLN3-243ENST00000635973 MYOM1P52179 1685 aa25.04■■□□□ 1.6
CLN3-243ENST00000635973 NBPF14Q5TI25 921 aa25.01■■□□□ 1.59
CLN3-243ENST00000635973 CCDC7Q96M83 1385 aa25.01■■□□□ 1.59
CLN3-243ENST00000635973 SBF2Q86WG5 1849 aa25■■□□□ 1.59
CLN3-243ENST00000635973 KIF7Q2M1P5 1343 aa25■■□□□ 1.59
CLN3-243ENST00000635973 EXOC5O00471 708 aa24.99■■□□□ 1.59
CLN3-243ENST00000635973 PEAK1Q9H792 1746 aa24.99■■□□□ 1.59
CLN3-243ENST00000635973 RREB1Q92766 1687 aa24.98■■□□□ 1.59
CLN3-243ENST00000635973 NLRP2Q9NX02 1062 aa24.98■■□□□ 1.59
CLN3-243ENST00000635973 NUP188Q5SRE5 1749 aa24.96■■□□□ 1.59
CLN3-243ENST00000635973 MARCH10Q8NA82 808 aaPredicted RBP24.95■■□□□ 1.58
CLN3-243ENST00000635973 COG3Q96JB2 828 aa24.95■■□□□ 1.58
CLN3-243ENST00000635973 ERBB3P21860 1342 aa24.94■■□□□ 1.58
CLN3-243ENST00000635973 ANKRD24Q8TF21 1146 aa24.94■■□□□ 1.58
CLN3-243ENST00000635973 BCL11BQ9C0K0 894 aaPredicted RBP24.94■■□□□ 1.58
CLN3-243ENST00000635973 NSD3Q9BZ95 1437 aa24.94■■□□□ 1.58
CLN3-243ENST00000635973 RGPD3A6NKT7 1758 aaPredicted RBP24.9■■□□□ 1.58
CLN3-243ENST00000635973 RGPD4Q7Z3J3 1758 aa24.9■■□□□ 1.58
CLN3-243ENST00000635973 PLSCR1O15162 318 aa24.9■■□□□ 1.58
CLN3-243ENST00000635973 PANK3Q9H999 370 aa24.9■■□□□ 1.58
CLN3-243ENST00000635973 WASHC2AQ641Q2 1341 aa24.89■■□□□ 1.58
CLN3-243ENST00000635973 IL2RBP14784 551 aa24.89■■□□□ 1.58
CLN3-243ENST00000635973 BCL9O00512 1426 aa24.88■■□□□ 1.57
CLN3-243ENST00000635973 TNS2Q63HR2 1409 aa24.88■■□□□ 1.57
CLN3-243ENST00000635973 IP6K1Q92551 441 aa24.88■■□□□ 1.57
CLN3-243ENST00000635973 LTV1Q96GA3 475 aaPredicted RBP24.88■■□□□ 1.57
CLN3-243ENST00000635973 CARD14Q9BXL6 1004 aa24.88■■□□□ 1.57
CLN3-243ENST00000635973 AMPHP49418 695 aa24.87■■□□□ 1.57
CLN3-243ENST00000635973 KAT6BQ8WYB5 2073 aa24.87■■□□□ 1.57
CLN3-243ENST00000635973 FAM208AQ9UK61 1670 aaKnown RBP24.86■■□□□ 1.57
CLN3-243ENST00000635973 KIF20BQ96Q89 1820 aa24.85■■□□□ 1.57
CLN3-243ENST00000635973 CGNL1Q0VF96 1302 aa24.85■■□□□ 1.57
CLN3-243ENST00000635973 PTF1AQ7RTS3 328 aa24.84■■□□□ 1.57
CLN3-243ENST00000635973 GGNBP2Q9H3C7 697 aa24.84■■□□□ 1.57
CLN3-243ENST00000635973 FYB1O15117 783 aa24.82■■□□□ 1.56
CLN3-243ENST00000635973 MAP3K19Q56UN5 1328 aa24.82■■□□□ 1.56
CLN3-243ENST00000635973 HOXC9P31274 260 aa24.8■■□□□ 1.56
CLN3-243ENST00000635973 ACSBG1Q96GR2 724 aa24.8■■□□□ 1.56
CLN3-243ENST00000635973 KNSTRNQ9Y448 316 aa24.8■■□□□ 1.56
CLN3-243ENST00000635973 NHSQ6T4R5 1651 aa24.79■■□□□ 1.56
CLN3-243ENST00000635973 FBLN1P23142 703 aa24.78■■□□□ 1.56
CLN3-243ENST00000635973 KCNQ2O43526 872 aa24.77■■□□□ 1.56
CLN3-243ENST00000635973 SPON1Q9HCB6 807 aa24.77■■□□□ 1.56
CLN3-243ENST00000635973 PPP1R1BQ9UD71 204 aaPredicted RBP24.77■■□□□ 1.56
CLN3-243ENST00000635973 RGPD2P0DJD1 1756 aa24.76■■□□□ 1.55
CLN3-243ENST00000635973 TXNRD1Q16881 649 aa24.76■■□□□ 1.55
CLN3-243ENST00000635973 DDX54Q8TDD1 881 aaKnown RBP24.76■■□□□ 1.55
CLN3-243ENST00000635973 RRS1Q15050 365 aaKnown RBP24.75■■□□□ 1.55
CLN3-243ENST00000635973 STK32BQ9NY57 414 aa24.75■■□□□ 1.55
CLN3-243ENST00000635973 RTL1A6NKG5 1358 aa24.75■■□□□ 1.55
CLN3-243ENST00000635973 PROM2Q8N271 834 aa24.74■■□□□ 1.55
CLN3-243ENST00000635973 SMG6Q86US8 1419 aaKnown RBP24.74■■□□□ 1.55
CLN3-243ENST00000635973 NSD2O96028 1365 aa24.73■■□□□ 1.55
CLN3-243ENST00000635973 BTAF1O14981 1849 aa24.72■■□□□ 1.55
CLN3-243ENST00000635973 ANO8Q9HCE9 1232 aaPredicted RBP24.72■■□□□ 1.55
CLN3-243ENST00000635973 ANKRD26Q9UPS8 1709 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms