RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 SCARF2Q96GP6 870 aaPredicted RBP3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 INSM2Q96T92 566 aaPredicted RBP3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 C1QTNF2Q9BXJ5 285 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 ZBTB3Q9H5J0 574 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 POLMQ9NP87 494 aaPredicted RBP3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 SLC35F4A4IF30 521 aa3.22□□□□□ -1.89
SMARCB1-209ENST00000635578 SPINT1O43278 529 aa3.22□□□□□ -1.89
SMARCB1-209ENST00000635578 HAP1P54257 671 aaPredicted RBP3.22□□□□□ -1.89
SMARCB1-209ENST00000635578 FOXK2Q01167 660 aa3.22□□□□□ -1.89
SMARCB1-209ENST00000635578 NBPF14Q5TI25 921 aa3.22□□□□□ -1.89
SMARCB1-209ENST00000635578 LYPD4Q6UWN0 246 aa3.22□□□□□ -1.89
SMARCB1-209ENST00000635578 SH3RF1Q7Z6J0 888 aa3.22□□□□□ -1.89
SMARCB1-209ENST00000635578 PGPEP1Q9NXJ5 209 aa3.22□□□□□ -1.89
SMARCB1-209ENST00000635578 MAP4K5Q9Y4K4 846 aa3.22□□□□□ -1.89
SMARCB1-209ENST00000635578 NUTM2BA6NNL0 878 aaPredicted RBP3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 NUTM2EB1AL46 878 aaPredicted RBP3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 MSTNO14793 375 aa3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 NUTM2DQ5VT03 806 aaPredicted RBP3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 SH3BP5LQ7L8J4 393 aa3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 RIC3Q7Z5B4 369 aa3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 NUTM2AQ8IVF1 878 aaPredicted RBP3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 GALNT6Q8NCL4 622 aa3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 ARMC2Q8NEN0 867 aa3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 ZNF395Q9H8N7 513 aaPredicted RBP3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 KDM2AQ9Y2K7 1162 aa3.21□□□□□ -1.9
SMARCB1-209ENST00000635578 ADAM23O75077 832 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 CELA2BP08218 269 aaPredicted RBP3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 GJA5P36382 358 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 RAB15P59190 212 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 QPCTQ16769 361 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 PLA2G4EQ3MJ16 856 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 ERFEQ4G0M1 354 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 Q6ZVU0 165 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 TRMT44Q8IYL2 757 aaKnown RBP3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 SLC10A4Q96EP9 437 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 DCAF5Q96JK2 942 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 SPOCK3Q9BQ16 436 aa3.2□□□□□ -1.9
SMARCB1-209ENST00000635578 CNTNAP5Q8WYK1 1306 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 SENP3-EIF4A1A0A087X0R7 540 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 GPR25O00155 361 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 SRSF11Q05519 484 aaKnown RBP3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 GAS6Q14393 721 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 DIXDC1Q155Q3 683 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 AMHR2Q16671 573 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 PRPF38BQ5VTL8 546 aaKnown RBP3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 PODNQ7Z5L7 613 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 PARP9Q8IXQ6 854 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 NEDD1Q8NHV4 660 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 RNF217Q8TC41 542 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 KCTD15Q96SI1 283 aaPredicted RBP3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 CUEDC1Q9NWM3 386 aaPredicted RBP3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 LIMD1Q9UGP4 676 aa3.19□□□□□ -1.9
SMARCB1-209ENST00000635578 PHF20L1A8MW92 1017 aa3.18□□□□□ -1.9
SMARCB1-209ENST00000635578 ITGB2P05107 769 aa3.18□□□□□ -1.9
SMARCB1-209ENST00000635578 HELBQ8NG08 1087 aaPredicted RBP3.18□□□□□ -1.9
SMARCB1-209ENST00000635578 ARHGAP9Q9BRR9 750 aa3.18□□□□□ -1.9
SMARCB1-209ENST00000635578 ENAMQ9NRM1 1142 aa3.18□□□□□ -1.9
SMARCB1-209ENST00000635578 PROCP04070 461 aa3.17□□□□□ -1.9
SMARCB1-209ENST00000635578 RHOQP17081 205 aa3.17□□□□□ -1.9
SMARCB1-209ENST00000635578 DHX9Q08211 1270 aaKnown RBP3.17□□□□□ -1.9
SMARCB1-209ENST00000635578 RTL5Q5HYW3 569 aaPredicted RBP3.17□□□□□ -1.9
SMARCB1-209ENST00000635578 INTS6LQ5JSJ4 861 aaKnown RBP3.17□□□□□ -1.9
SMARCB1-209ENST00000635578 RIPOR1Q6ZS17 1223 aa3.17□□□□□ -1.9
SMARCB1-209ENST00000635578 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.17□□□□□ -1.9
SMARCB1-209ENST00000635578 TMPRSS4Q9NRS4 437 aa3.17□□□□□ -1.9
SMARCB1-209ENST00000635578 IGF1RP08069 1367 aa3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 K7ELQ4 463 aaPredicted RBP3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 LILRB3O75022 631 aa3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 FOXD4L5Q5VV16 416 aaPredicted RBP3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 MYSM1Q5VVJ2 828 aa3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 BARGINQ6ZT62 677 aa3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 PRICKLE2Q7Z3G6 844 aa3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 ZBTB33Q86T24 672 aa3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 BEND7Q8N7W2 519 aaPredicted RBP3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 ZNF784Q8NCA9 323 aaPredicted RBP3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 GTPBP3Q969Y2 492 aaKnown RBP3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 ZNF837Q96EG3 531 aaPredicted RBP3.16□□□□□ -1.9
SMARCB1-209ENST00000635578 ZMYND10O75800 440 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 ADH1AP07327 375 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 FURINP09958 794 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 BCRP11274 1271 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 FOXR1Q6PIV2 292 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 LYSMD3Q7Z3D4 306 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 Q8N3U1 123 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 GPKOWQ92917 476 aaPredicted RBP eCLIP3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 ACDQ96AP0 544 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 KRTAP4-8Q9BYQ9 185 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 MBIPQ9NS73 344 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 FKBPLQ9UIM3 349 aa3.15□□□□□ -1.91
SMARCB1-209ENST00000635578 PTGIRP43119 386 aa3.14□□□□□ -1.91
SMARCB1-209ENST00000635578 CTDSPL2Q05D32 466 aa3.14□□□□□ -1.91
SMARCB1-209ENST00000635578 PDXDC2PQ6P474 469 aa3.14□□□□□ -1.91
SMARCB1-209ENST00000635578 TRIM22Q8IYM9 498 aa3.14□□□□□ -1.91
SMARCB1-209ENST00000635578 LRRN4Q8WUT4 740 aa3.14□□□□□ -1.91
SMARCB1-209ENST00000635578 CYLDQ9NQC7 956 aa3.14□□□□□ -1.91
SMARCB1-209ENST00000635578 POLR3EQ9NVU0 708 aa3.14□□□□□ -1.91
SMARCB1-209ENST00000635578 CDV3Q9UKY7 258 aaKnown RBP3.14□□□□□ -1.91
SMARCB1-209ENST00000635578 ERVH48-1M5A8F1 160 aa3.13□□□□□ -1.91
SMARCB1-209ENST00000635578 MEN1O00255 615 aa3.13□□□□□ -1.91
SMARCB1-209ENST00000635578 TRIM66O15016 1216 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 1592.8 ms