RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ZNF316A6NFI3 1004 aaPredicted RBP17.61■□□□□ 0.41
PNKP-217ENST00000625216 SOX12O15370 315 aa17.61■□□□□ 0.41
PNKP-217ENST00000625216 NME9Q86XW9 330 aa17.61■□□□□ 0.41
PNKP-217ENST00000625216 A0A1W2PP64 1363 aa17.61■□□□□ 0.41
PNKP-217ENST00000625216 THSD7AQ9UPZ6 1657 aa17.61■□□□□ 0.41
PNKP-217ENST00000625216 C11orf95C9JLR9 678 aaPredicted RBP17.6■□□□□ 0.41
PNKP-217ENST00000625216 BAG6P46379 1132 aa17.6■□□□□ 0.41
PNKP-217ENST00000625216 TOM1L2Q6ZVM7 507 aa17.6■□□□□ 0.41
PNKP-217ENST00000625216 WDR17Q8IZU2 1322 aa17.6■□□□□ 0.41
PNKP-217ENST00000625216 DEFB132Q7Z7B7 95 aa17.59■□□□□ 0.41
PNKP-217ENST00000625216 FAM182BQ5T319 152 aa17.58■□□□□ 0.4
PNKP-217ENST00000625216 CDCA7Q9BWT1 371 aaPredicted RBP17.58■□□□□ 0.4
PNKP-217ENST00000625216 MON2Q7Z3U7 1717 aa17.58■□□□□ 0.4
PNKP-217ENST00000625216 CARD10Q9BWT7 1032 aa17.57■□□□□ 0.4
PNKP-217ENST00000625216 ANKRD36BQ8N2N9 1353 aa17.56■□□□□ 0.4
PNKP-217ENST00000625216 CSB-PGBD3P0DP91 1061 aa17.56■□□□□ 0.4
PNKP-217ENST00000625216 NFAT5O94916 1531 aa17.56■□□□□ 0.4
PNKP-217ENST00000625216 COG3Q96JB2 828 aa17.55■□□□□ 0.4
PNKP-217ENST00000625216 ABCC6O95255 1503 aa17.54■□□□□ 0.4
PNKP-217ENST00000625216 COL18A1P39060 1754 aa17.53■□□□□ 0.4
PNKP-217ENST00000625216 HSPA5P11021 654 aaKnown RBP17.53■□□□□ 0.4
PNKP-217ENST00000625216 DDB1Q16531 1140 aa17.53■□□□□ 0.4
PNKP-217ENST00000625216 OVOS2A0A0J9YW53 1432 aa17.53■□□□□ 0.4
PNKP-217ENST00000625216 OVOS2Q6IE36 1432 aa17.53■□□□□ 0.4
PNKP-217ENST00000625216 TRIM37O94972 964 aa17.52■□□□□ 0.4
PNKP-217ENST00000625216 DISP2A7MBM2 1401 aa17.52■□□□□ 0.4
PNKP-217ENST00000625216 CCDC7Q96M83 1385 aa17.52■□□□□ 0.39
PNKP-217ENST00000625216 EIF4G2P78344 907 aaKnown RBP eCLIP17.51■□□□□ 0.39
PNKP-217ENST00000625216 EN1Q05925 392 aaPredicted RBP17.51■□□□□ 0.39
PNKP-217ENST00000625216 USP54Q70EL1 1684 aa17.51■□□□□ 0.39
PNKP-217ENST00000625216 ERBB3P21860 1342 aa17.5■□□□□ 0.39
PNKP-217ENST00000625216 IP6K1Q92551 441 aa17.5■□□□□ 0.39
PNKP-217ENST00000625216 EXOC5O00471 708 aa17.49■□□□□ 0.39
PNKP-217ENST00000625216 FYB1O15117 783 aa17.49■□□□□ 0.39
PNKP-217ENST00000625216 APBA3O96018 575 aa17.49■□□□□ 0.39
PNKP-217ENST00000625216 ANKRD24Q8TF21 1146 aa17.48■□□□□ 0.39
PNKP-217ENST00000625216 NLRP2Q9NX02 1062 aa17.48■□□□□ 0.39
PNKP-217ENST00000625216 CAMKK2Q96RR4 588 aa17.47■□□□□ 0.39
PNKP-217ENST00000625216 PARD3Q8TEW0 1356 aa17.47■□□□□ 0.39
PNKP-217ENST00000625216 OVOS2A0A0G2JMS6 1433 aa17.47■□□□□ 0.39
PNKP-217ENST00000625216 RGPD1P0DJD0 1748 aa17.46■□□□□ 0.39
PNKP-217ENST00000625216 PARP4Q9UKK3 1724 aaKnown RBP17.46■□□□□ 0.39
PNKP-217ENST00000625216 AMPHP49418 695 aa17.45■□□□□ 0.38
PNKP-217ENST00000625216 EZH2Q15910 746 aaKnown RBP17.45■□□□□ 0.38
PNKP-217ENST00000625216 BCL9O00512 1426 aa17.45■□□□□ 0.38
PNKP-217ENST00000625216 MAP3K19Q56UN5 1328 aa17.45■□□□□ 0.38
PNKP-217ENST00000625216 SRCAPQ6ZRS2 3230 aa17.44■□□□□ 0.38
PNKP-217ENST00000625216 IL2RBP14784 551 aa17.44■□□□□ 0.38
PNKP-217ENST00000625216 MARCH10Q8NA82 808 aaPredicted RBP17.44■□□□□ 0.38
PNKP-217ENST00000625216 GGNBP2Q9H3C7 697 aa17.44■□□□□ 0.38
PNKP-217ENST00000625216 HOXC9P31274 260 aa17.43■□□□□ 0.38
PNKP-217ENST00000625216 CARD14Q9BXL6 1004 aa17.43■□□□□ 0.38
PNKP-217ENST00000625216 BCL11BQ9C0K0 894 aaPredicted RBP17.43■□□□□ 0.38
PNKP-217ENST00000625216 PLSCR1O15162 318 aa17.41■□□□□ 0.38
PNKP-217ENST00000625216 RTL1A6NKG5 1358 aa17.4■□□□□ 0.38
PNKP-217ENST00000625216 FBLN1P23142 703 aa17.4■□□□□ 0.38
PNKP-217ENST00000625216 RGPD5Q99666 1765 aa17.39■□□□□ 0.37
PNKP-217ENST00000625216 LTV1Q96GA3 475 aaPredicted RBP17.39■□□□□ 0.37
PNKP-217ENST00000625216 LRRC37A3O60309 1634 aa17.39■□□□□ 0.37
PNKP-217ENST00000625216 KIF24Q5T7B8 1368 aa17.39■□□□□ 0.37
PNKP-217ENST00000625216 TNS2Q63HR2 1409 aa17.38■□□□□ 0.37
PNKP-217ENST00000625216 TNS1Q9HBL0 1735 aaKnown RBP17.38■□□□□ 0.37
PNKP-217ENST00000625216 RRS1Q15050 365 aaKnown RBP17.38■□□□□ 0.37
PNKP-217ENST00000625216 NBPF14Q5TI25 921 aa17.38■□□□□ 0.37
PNKP-217ENST00000625216 CGNL1Q0VF96 1302 aa17.38■□□□□ 0.37
PNKP-217ENST00000625216 NSD3Q9BZ95 1437 aa17.38■□□□□ 0.37
PNKP-217ENST00000625216 PSDA5PKW4 1024 aaPredicted RBP17.37■□□□□ 0.37
PNKP-217ENST00000625216 R3HDM1Q15032 1099 aaKnown RBP17.37■□□□□ 0.37
PNKP-217ENST00000625216 POLR3GLQ9BT43 218 aa17.37■□□□□ 0.37
PNKP-217ENST00000625216 WASHC2AQ641Q2 1341 aa17.37■□□□□ 0.37
PNKP-217ENST00000625216 LTN1O94822 1766 aa17.37■□□□□ 0.37
PNKP-217ENST00000625216 PEAK1Q9H792 1746 aa17.36■□□□□ 0.37
PNKP-217ENST00000625216 INSRP06213 1382 aa17.34■□□□□ 0.37
PNKP-217ENST00000625216 SMG6Q86US8 1419 aaKnown RBP17.33■□□□□ 0.36
PNKP-217ENST00000625216 FLT4P35916 1363 aa17.33■□□□□ 0.36
PNKP-217ENST00000625216 KIF7Q2M1P5 1343 aa17.33■□□□□ 0.36
PNKP-217ENST00000625216 HSP90AB2PQ58FF8 381 aa17.33■□□□□ 0.36
PNKP-217ENST00000625216 WNK3Q9BYP7 1800 aa17.33■□□□□ 0.36
PNKP-217ENST00000625216 NBPF6Q5VWK0 638 aa17.32■□□□□ 0.36
PNKP-217ENST00000625216 DIEXFQ68CQ4 756 aaKnown RBP17.32■□□□□ 0.36
PNKP-217ENST00000625216 PTF1AQ7RTS3 328 aa17.32■□□□□ 0.36
PNKP-217ENST00000625216 NBPF4Q96M43 638 aa17.32■□□□□ 0.36
PNKP-217ENST00000625216 MYOM1P52179 1685 aa17.32■□□□□ 0.36
PNKP-217ENST00000625216 ZCRB1Q8TBF4 217 aaKnown RBP17.31■□□□□ 0.36
PNKP-217ENST00000625216 DDX54Q8TDD1 881 aaKnown RBP17.31■□□□□ 0.36
PNKP-217ENST00000625216 PANK3Q9H999 370 aa17.31■□□□□ 0.36
PNKP-217ENST00000625216 KCNQ2O43526 872 aa17.3■□□□□ 0.36
PNKP-217ENST00000625216 RAPGEF4Q8WZA2 1011 aa17.3■□□□□ 0.36
PNKP-217ENST00000625216 FAM208AQ9UK61 1670 aaKnown RBP17.29■□□□□ 0.36
PNKP-217ENST00000625216 PROM2Q8N271 834 aa17.29■□□□□ 0.36
PNKP-217ENST00000625216 ACSBG1Q96GR2 724 aa17.29■□□□□ 0.36
PNKP-217ENST00000625216 EMILIN1Q9Y6C2 1016 aa17.29■□□□□ 0.36
PNKP-217ENST00000625216 TXNRD1Q16881 649 aa17.28■□□□□ 0.36
PNKP-217ENST00000625216 PPM1GO15355 546 aaPredicted RBP17.27■□□□□ 0.36
PNKP-217ENST00000625216 TATP17735 454 aaPredicted RBP17.27■□□□□ 0.36
PNKP-217ENST00000625216 DDX10Q13206 875 aaKnown RBP17.27■□□□□ 0.36
PNKP-217ENST00000625216 POLKQ9UBT6 870 aa17.27■□□□□ 0.36
PNKP-217ENST00000625216 SBF2Q86WG5 1849 aa17.26■□□□□ 0.35
PNKP-217ENST00000625216 NSD2O96028 1365 aa17.26■□□□□ 0.35
PNKP-217ENST00000625216 RREB1Q92766 1687 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms