RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 U2AF1Q01081 240 aaKnown RBP eCLIP14.18□□□□□ -0.14
CPNE3-212ENST00000621783 TOM1O60784 492 aa14.17□□□□□ -0.14
CPNE3-212ENST00000621783 HOXC9P31274 260 aa14.17□□□□□ -0.14
CPNE3-212ENST00000621783 EIF4A2Q14240 407 aaKnown RBP14.17□□□□□ -0.14
CPNE3-212ENST00000621783 HSP90AB2PQ58FF8 381 aa14.17□□□□□ -0.14
CPNE3-212ENST00000621783 CCDC146Q8IYE0 955 aa14.17□□□□□ -0.14
CPNE3-212ENST00000621783 ABCC6O95255 1503 aa14.16□□□□□ -0.14
CPNE3-212ENST00000621783 COL22A1Q8NFW1 1626 aaPredicted RBP14.16□□□□□ -0.14
CPNE3-212ENST00000621783 SENP3-EIF4A1A0A087X0R7 540 aa14.16□□□□□ -0.14
CPNE3-212ENST00000621783 ZBTB7CA1YPR0 619 aa14.15□□□□□ -0.14
CPNE3-212ENST00000621783 UBAP1LF5GYI3 381 aa14.15□□□□□ -0.14
CPNE3-212ENST00000621783 ARHGEF25Q86VW2 580 aa14.15□□□□□ -0.14
CPNE3-212ENST00000621783 CERKQ8TCT0 537 aa14.15□□□□□ -0.14
CPNE3-212ENST00000621783 COL18A1P39060 1754 aa14.14□□□□□ -0.15
CPNE3-212ENST00000621783 CABLES1Q8TDN4 633 aa14.14□□□□□ -0.15
CPNE3-212ENST00000621783 CPDO75976 1380 aa14.13□□□□□ -0.15
CPNE3-212ENST00000621783 PIP4K2BP78356 416 aa14.13□□□□□ -0.15
CPNE3-212ENST00000621783 IP6K1Q92551 441 aa14.13□□□□□ -0.15
CPNE3-212ENST00000621783 RUNDC1Q96C34 613 aa14.13□□□□□ -0.15
CPNE3-212ENST00000621783 RSPH6AQ9H0K4 717 aa14.13□□□□□ -0.15
CPNE3-212ENST00000621783 CAMTA1Q9Y6Y1 1673 aa14.13□□□□□ -0.15
CPNE3-212ENST00000621783 RGPD5Q99666 1765 aa14.11□□□□□ -0.15
CPNE3-212ENST00000621783 KIAA0232Q92628 1395 aa14.11□□□□□ -0.15
CPNE3-212ENST00000621783 LMO7Q8WWI1 1683 aa14.11□□□□□ -0.15
CPNE3-212ENST00000621783 APAF1O14727 1248 aa14.11□□□□□ -0.15
CPNE3-212ENST00000621783 HMOX1P09601 288 aa14.11□□□□□ -0.15
CPNE3-212ENST00000621783 ZC3H6P61129 1189 aaKnown RBP14.11□□□□□ -0.15
CPNE3-212ENST00000621783 LRRC59Q96AG4 307 aaKnown RBP14.11□□□□□ -0.15
CPNE3-212ENST00000621783 PLEKHF1Q96S99 279 aa14.11□□□□□ -0.15
CPNE3-212ENST00000621783 RGPD2P0DJD1 1756 aa14.1□□□□□ -0.15
CPNE3-212ENST00000621783 PRKAR2BP31323 418 aa14.1□□□□□ -0.15
CPNE3-212ENST00000621783 SALL2Q9Y467 1007 aaPredicted RBP14.1□□□□□ -0.15
CPNE3-212ENST00000621783 FAM208AQ9UK61 1670 aaKnown RBP14.1□□□□□ -0.15
CPNE3-212ENST00000621783 IGSF1Q8N6C5 1336 aa14.1□□□□□ -0.15
CPNE3-212ENST00000621783 MAPK8IP3Q9UPT6 1336 aa14.1□□□□□ -0.15
CPNE3-212ENST00000621783 FCHSD2O94868 740 aa14.09□□□□□ -0.15
CPNE3-212ENST00000621783 AEBP1Q8IUX7 1158 aa14.09□□□□□ -0.15
CPNE3-212ENST00000621783 LTV1Q96GA3 475 aaPredicted RBP14.09□□□□□ -0.15
CPNE3-212ENST00000621783 PNNQ9H307 717 aaKnown RBP14.09□□□□□ -0.15
CPNE3-212ENST00000621783 KDRP35968 1356 aa14.09□□□□□ -0.15
CPNE3-212ENST00000621783 HAP1P54257 671 aaPredicted RBP14.08□□□□□ -0.16
CPNE3-212ENST00000621783 TCP11L2Q8N4U5 519 aa14.08□□□□□ -0.16
CPNE3-212ENST00000621783 EYA1Q99502 592 aa14.08□□□□□ -0.16
CPNE3-212ENST00000621783 NCAPD2Q15021 1401 aa14.07□□□□□ -0.16
CPNE3-212ENST00000621783 SULT6B1Q6IMI4 303 aa14.07□□□□□ -0.16
CPNE3-212ENST00000621783 ZNF521Q96K83 1311 aa14.07□□□□□ -0.16
CPNE3-212ENST00000621783 CHRNA2Q15822 529 aa14.06□□□□□ -0.16
CPNE3-212ENST00000621783 NGEFQ8N5V2 710 aa14.06□□□□□ -0.16
CPNE3-212ENST00000621783 ANKRD24Q8TF21 1146 aa14.06□□□□□ -0.16
CPNE3-212ENST00000621783 AXIN2Q9Y2T1 843 aa14.06□□□□□ -0.16
CPNE3-212ENST00000621783 RRP7AQ9Y3A4 280 aaKnown RBP14.06□□□□□ -0.16
CPNE3-212ENST00000621783 ERBB3P21860 1342 aa14.06□□□□□ -0.16
CPNE3-212ENST00000621783 COL14A1Q05707 1796 aaKnown RBP14.06□□□□□ -0.16
CPNE3-212ENST00000621783 NEFMP07197 916 aa14.05□□□□□ -0.16
CPNE3-212ENST00000621783 PRDM11Q9NQV5 511 aa14.05□□□□□ -0.16
CPNE3-212ENST00000621783 TMPOP42166 694 aaKnown RBP14.04□□□□□ -0.16
CPNE3-212ENST00000621783 PHACTR3Q96KR7 559 aa14.04□□□□□ -0.16
CPNE3-212ENST00000621783 COL5A2P05997 1499 aaPredicted RBP14.04□□□□□ -0.16
CPNE3-212ENST00000621783 PDE3BQ13370 1112 aa14.03□□□□□ -0.16
CPNE3-212ENST00000621783 NEUROD2Q15784 382 aa14.03□□□□□ -0.16
CPNE3-212ENST00000621783 NCBP3Q53F19 620 aaKnown RBP14.03□□□□□ -0.16
CPNE3-212ENST00000621783 NBPF6Q5VWK0 638 aa14.03□□□□□ -0.16
CPNE3-212ENST00000621783 USHBP1Q8N6Y0 703 aa14.03□□□□□ -0.16
CPNE3-212ENST00000621783 NBPF4Q96M43 638 aa14.03□□□□□ -0.16
CPNE3-212ENST00000621783 PLCH1Q4KWH8 1693 aa14.03□□□□□ -0.16
CPNE3-212ENST00000621783 DLG5Q8TDM6 1919 aa14.03□□□□□ -0.16
CPNE3-212ENST00000621783 NFE2L2Q16236 605 aa14.02□□□□□ -0.17
CPNE3-212ENST00000621783 CCDC27Q2M243 656 aa14.02□□□□□ -0.17
CPNE3-212ENST00000621783 JCADQ9P266 1359 aa14.01□□□□□ -0.17
CPNE3-212ENST00000621783 WWC1Q8IX03 1113 aa14.01□□□□□ -0.17
CPNE3-212ENST00000621783 RIPK4P57078 832 aa14□□□□□ -0.17
CPNE3-212ENST00000621783 CDCA7LQ96GN5 454 aa14□□□□□ -0.17
CPNE3-212ENST00000621783 TRIM35Q9UPQ4 493 aa14□□□□□ -0.17
CPNE3-212ENST00000621783 NRAPQ86VF7 1730 aa14□□□□□ -0.17
CPNE3-212ENST00000621783 CSB-PGBD3P0DP91 1061 aa13.99□□□□□ -0.17
CPNE3-212ENST00000621783 GOLGA2Q08379 1002 aa13.99□□□□□ -0.17
CPNE3-212ENST00000621783 WDR17Q8IZU2 1322 aa13.98□□□□□ -0.17
CPNE3-212ENST00000621783 FAM83GA6ND36 823 aa13.98□□□□□ -0.17
CPNE3-212ENST00000621783 LRRC37A3O60309 1634 aa13.97□□□□□ -0.17
CPNE3-212ENST00000621783 WDR63Q8IWG1 891 aa13.97□□□□□ -0.17
CPNE3-212ENST00000621783 NLRP2Q9NX02 1062 aa13.97□□□□□ -0.17
CPNE3-212ENST00000621783 PARP4Q9UKK3 1724 aaKnown RBP13.97□□□□□ -0.17
CPNE3-212ENST00000621783 MEGF6O75095 1541 aa13.96□□□□□ -0.17
CPNE3-212ENST00000621783 PKD1L3Q7Z443 1732 aa13.96□□□□□ -0.17
CPNE3-212ENST00000621783 NWD2Q9ULI1 1742 aa13.96□□□□□ -0.17
CPNE3-212ENST00000621783 E9PSI1 815 aa13.96□□□□□ -0.17
CPNE3-212ENST00000621783 SLFN5Q08AF3 891 aa13.96□□□□□ -0.17
CPNE3-212ENST00000621783 LMOD3Q0VAK6 560 aa13.96□□□□□ -0.17
CPNE3-212ENST00000621783 MTHFSDQ2M296 383 aaKnown RBP13.96□□□□□ -0.17
CPNE3-212ENST00000621783 GAS2L2Q8NHY3 880 aa13.96□□□□□ -0.17
CPNE3-212ENST00000621783 SPINK5Q9NQ38 1064 aaPredicted RBP13.96□□□□□ -0.17
CPNE3-212ENST00000621783 LRP6O75581 1613 aa13.95□□□□□ -0.18
CPNE3-212ENST00000621783 NUTM2BA6NNL0 878 aaPredicted RBP13.95□□□□□ -0.18
CPNE3-212ENST00000621783 NUTM2EB1AL46 878 aaPredicted RBP13.95□□□□□ -0.18
CPNE3-212ENST00000621783 ADAMTS2O95450 1211 aa13.95□□□□□ -0.18
CPNE3-212ENST00000621783 HSPA1LP34931 641 aa13.95□□□□□ -0.18
CPNE3-212ENST00000621783 DUSP27Q5VZP5 1158 aa13.95□□□□□ -0.18
CPNE3-212ENST00000621783 NUTM2AQ8IVF1 878 aaPredicted RBP13.95□□□□□ -0.18
CPNE3-212ENST00000621783 PLEKHG2Q9H7P9 1386 aa13.95□□□□□ -0.18
CPNE3-212ENST00000621783 WNK3Q9BYP7 1800 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms