RNA–Protein interactions for RNA: ENST00000621526.4

CPNE3-211, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 279 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-211ENST00000621526 CCDC61Q9Y6R9 512 aa3.61□□□□□ -1.83
CPNE3-211ENST00000621526 EIF3AQ14152 1382 aaKnown RBP3.61□□□□□ -1.83
CPNE3-211ENST00000621526 NALCNQ8IZF0 1738 aa3.61□□□□□ -1.83
CPNE3-211ENST00000621526 TNS1Q9HBL0 1735 aaKnown RBP3.61□□□□□ -1.83
CPNE3-211ENST00000621526 COL14A1Q05707 1796 aaKnown RBP3.61□□□□□ -1.83
CPNE3-211ENST00000621526 ATP7BP35670 1465 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 PCNTO95613 3336 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 RREB1Q92766 1687 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 CTCFP49711 727 aaPredicted RBP3.6□□□□□ -1.83
CPNE3-211ENST00000621526 TGFB2P61812 414 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 NUDT16Q96DE0 195 aaKnown RBP3.6□□□□□ -1.83
CPNE3-211ENST00000621526 ABHD8Q96I13 439 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 USP19O94966 1318 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 WDR17Q8IZU2 1322 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 KDM2BQ8NHM5 1336 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 PRR36Q9H6K5 1346 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 CASZ1Q86V15 1759 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 VPS8Q8N3P4 1428 aa3.6□□□□□ -1.83
CPNE3-211ENST00000621526 YTHDC2Q9H6S0 1430 aaKnown RBP3.6□□□□□ -1.83
CPNE3-211ENST00000621526 IQGAP3Q86VI3 1631 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 CROCC2H7BZ55 1655 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 GCC2Q8IWJ2 1684 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 NUP188Q5SRE5 1749 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 VEGFAP15692 232 aaPredicted RBP3.59□□□□□ -1.83
CPNE3-211ENST00000621526 RGL3Q3MIN7 710 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 CFAP70Q5T0N1 1121 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 NUTM2GQ5VZR2 741 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 ARHGAP27Q6ZUM4 889 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 ARHGEF25Q86VW2 580 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 STAC3Q96MF2 364 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 RRAGCQ9HB90 399 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 AXIN2Q9Y2T1 843 aa3.59□□□□□ -1.83
CPNE3-211ENST00000621526 USP6P35125 1406 aa3.59□□□□□ -1.84
CPNE3-211ENST00000621526 MYOM1P52179 1685 aa3.59□□□□□ -1.84
CPNE3-211ENST00000621526 FOXN1O15353 648 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 MSH5O43196 834 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 NLRP6P59044 892 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 SAFB2Q14151 953 aaKnown RBP eCLIP3.58□□□□□ -1.84
CPNE3-211ENST00000621526 KCNH5Q8NCM2 988 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 ACSBG1Q96GR2 724 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 CREBZFQ9NS37 354 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 WBP1LQ9NX94 342 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 ACEP12821 1306 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 IGSF1Q8N6C5 1336 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 POLR3AO14802 1390 aaPredicted RBP3.58□□□□□ -1.84
CPNE3-211ENST00000621526 KIF1AQ12756 1690 aa3.58□□□□□ -1.84
CPNE3-211ENST00000621526 IL2RBP14784 551 aa3.57□□□□□ -1.84
CPNE3-211ENST00000621526 PLCH1Q4KWH8 1693 aa3.57□□□□□ -1.84
CPNE3-211ENST00000621526 C9orf131Q5VYM1 1079 aa3.57□□□□□ -1.84
CPNE3-211ENST00000621526 C10orf71Q711Q0 1435 aa3.57□□□□□ -1.84
CPNE3-211ENST00000621526 NRAPQ86VF7 1730 aa3.57□□□□□ -1.84
CPNE3-211ENST00000621526 AIDAQ96BJ3 306 aa3.57□□□□□ -1.84
CPNE3-211ENST00000621526 CCDC7Q96M83 1385 aa3.57□□□□□ -1.84
CPNE3-211ENST00000621526 SLC4A1APQ9BWU0 796 aaKnown RBP3.57□□□□□ -1.84
CPNE3-211ENST00000621526 CDK19Q9BWU1 502 aa3.57□□□□□ -1.84
CPNE3-211ENST00000621526 MYO5BQ9ULV0 1848 aa3.56□□□□□ -1.84
CPNE3-211ENST00000621526 RGPD3A6NKT7 1758 aaPredicted RBP3.56□□□□□ -1.84
CPNE3-211ENST00000621526 RGPD4Q7Z3J3 1758 aa3.56□□□□□ -1.84
CPNE3-211ENST00000621526 COL5A2P05997 1499 aaPredicted RBP3.56□□□□□ -1.84
CPNE3-211ENST00000621526 MINK1Q8N4C8 1332 aaPredicted RBP3.56□□□□□ -1.84
CPNE3-211ENST00000621526 ZC3H4Q9UPT8 1303 aaKnown RBP3.56□□□□□ -1.84
CPNE3-211ENST00000621526 GLTPD2A6NH11 291 aa3.56□□□□□ -1.84
CPNE3-211ENST00000621526 CCDC85CA6NKD9 419 aa3.56□□□□□ -1.84
CPNE3-211ENST00000621526 CSB-PGBD3P0DP91 1061 aa3.56□□□□□ -1.84
CPNE3-211ENST00000621526 PRIM1P49642 420 aaKnown RBP3.56□□□□□ -1.84
CPNE3-211ENST00000621526 LBX1P52954 281 aa3.56□□□□□ -1.84
CPNE3-211ENST00000621526 MAP2K1Q02750 393 aaPredicted RBP3.56□□□□□ -1.84
CPNE3-211ENST00000621526 ZNF692Q9BU19 519 aaPredicted RBP3.56□□□□□ -1.84
CPNE3-211ENST00000621526 CCNL1Q9UK58 526 aaPredicted RBP3.56□□□□□ -1.84
CPNE3-211ENST00000621526 TRAK1Q9UPV9 953 aa3.56□□□□□ -1.84
CPNE3-211ENST00000621526 E9PCH4 1651 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 PHRF1Q9P1Y6 1649 aaKnown RBP3.55□□□□□ -1.84
CPNE3-211ENST00000621526 PIK3C2GO75747 1445 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 TNS2Q63HR2 1409 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 PLEKHG2Q9H7P9 1386 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 A0A0G2JLW4 131 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 KCNQ4P56696 695 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 MSL1Q68DK7 614 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 NLGN1Q8N2Q7 840 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 PIM2Q9P1W9 311 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 BCS1LQ9Y276 419 aa3.55□□□□□ -1.84
CPNE3-211ENST00000621526 PXDNLA1KZ92 1463 aa3.54□□□□□ -1.84
CPNE3-211ENST00000621526 PEAK1Q9H792 1746 aa3.54□□□□□ -1.84
CPNE3-211ENST00000621526 FCHSD2O94868 740 aa3.54□□□□□ -1.84
CPNE3-211ENST00000621526 KCNA3P22001 575 aa3.54□□□□□ -1.84
CPNE3-211ENST00000621526 SSFA2P28290 1259 aa3.54□□□□□ -1.84
CPNE3-211ENST00000621526 PRPF38BQ5VTL8 546 aaKnown RBP3.54□□□□□ -1.84
CPNE3-211ENST00000621526 DPY19L2Q6NUT2 758 aa3.54□□□□□ -1.84
CPNE3-211ENST00000621526 DDX54Q8TDD1 881 aaKnown RBP3.54□□□□□ -1.84
CPNE3-211ENST00000621526 GCC1Q96CN9 775 aa3.54□□□□□ -1.84
CPNE3-211ENST00000621526 MKRN1Q9UHC7 482 aaKnown RBP3.54□□□□□ -1.84
CPNE3-211ENST00000621526 TULP4Q9NRJ4 1543 aa3.54□□□□□ -1.84
CPNE3-211ENST00000621526 SPATA31E1Q6ZUB1 1445 aa3.53□□□□□ -1.84
CPNE3-211ENST00000621526 FMN2Q9NZ56 1722 aa3.53□□□□□ -1.84
CPNE3-211ENST00000621526 CNTNAP1P78357 1384 aa3.53□□□□□ -1.84
CPNE3-211ENST00000621526 CLTCL1P53675 1640 aa3.53□□□□□ -1.84
CPNE3-211ENST00000621526 ZBTB7CA1YPR0 619 aa3.53□□□□□ -1.84
CPNE3-211ENST00000621526 TMEM88BA6NKF7 163 aa3.53□□□□□ -1.84
CPNE3-211ENST00000621526 POTECB2RU33 542 aa3.53□□□□□ -1.84
CPNE3-211ENST00000621526 HSPA8P11142 646 aaKnown RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms