RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 CD163L1Q9NR16 1453 aa16.42■□□□□ 0.22
CPNE3-210ENST00000621245 LTN1O94822 1766 aa16.41■□□□□ 0.22
CPNE3-210ENST00000621245 PSDA5PKW4 1024 aaPredicted RBP16.41■□□□□ 0.22
CPNE3-210ENST00000621245 NLRP13Q86W25 1043 aa16.41■□□□□ 0.22
CPNE3-210ENST00000621245 DISP2A7MBM2 1401 aa16.41■□□□□ 0.22
CPNE3-210ENST00000621245 CPSF1Q10570 1443 aaKnown RBP16.41■□□□□ 0.22
CPNE3-210ENST00000621245 BRD4O60885 1362 aaPredicted RBP16.4■□□□□ 0.22
CPNE3-210ENST00000621245 EVA1CP58658 441 aa16.4■□□□□ 0.22
CPNE3-210ENST00000621245 NLRP6P59044 892 aa16.4■□□□□ 0.22
CPNE3-210ENST00000621245 TTC21BQ7Z4L5 1316 aa16.39■□□□□ 0.21
CPNE3-210ENST00000621245 TRIM37O94972 964 aa16.38■□□□□ 0.21
CPNE3-210ENST00000621245 BAG6P46379 1132 aa16.38■□□□□ 0.21
CPNE3-210ENST00000621245 BARGINQ6ZT62 677 aa16.38■□□□□ 0.21
CPNE3-210ENST00000621245 CRB1P82279 1406 aa16.37■□□□□ 0.21
CPNE3-210ENST00000621245 EZH2Q15910 746 aaKnown RBP16.37■□□□□ 0.21
CPNE3-210ENST00000621245 TCP11L2Q8N4U5 519 aa16.37■□□□□ 0.21
CPNE3-210ENST00000621245 AXIN2Q9Y2T1 843 aa16.37■□□□□ 0.21
CPNE3-210ENST00000621245 AATKQ6ZMQ8 1374 aa16.37■□□□□ 0.21
CPNE3-210ENST00000621245 SBNO2Q9Y2G9 1366 aa16.37■□□□□ 0.21
CPNE3-210ENST00000621245 SOX12O15370 315 aa16.36■□□□□ 0.21
CPNE3-210ENST00000621245 KTN1Q86UP2 1357 aaKnown RBP16.35■□□□□ 0.21
CPNE3-210ENST00000621245 CARD11Q9BXL7 1154 aa16.34■□□□□ 0.21
CPNE3-210ENST00000621245 FAM196AQ6ZSG2 479 aa16.33■□□□□ 0.2
CPNE3-210ENST00000621245 CAMKK2Q96RR4 588 aa16.33■□□□□ 0.2
CPNE3-210ENST00000621245 TONSLQ96HA7 1378 aa16.33■□□□□ 0.2
CPNE3-210ENST00000621245 RGPD3A6NKT7 1758 aaPredicted RBP16.32■□□□□ 0.2
CPNE3-210ENST00000621245 R3HDM1Q15032 1099 aaKnown RBP16.32■□□□□ 0.2
CPNE3-210ENST00000621245 RGPD4Q7Z3J3 1758 aa16.32■□□□□ 0.2
CPNE3-210ENST00000621245 ARHGEF25Q86VW2 580 aa16.32■□□□□ 0.2
CPNE3-210ENST00000621245 TTC21AQ8NDW8 1320 aa16.31■□□□□ 0.2
CPNE3-210ENST00000621245 APBA3O96018 575 aa16.31■□□□□ 0.2
CPNE3-210ENST00000621245 PDE3BQ13370 1112 aa16.31■□□□□ 0.2
CPNE3-210ENST00000621245 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.31■□□□□ 0.2
CPNE3-210ENST00000621245 WDR17Q8IZU2 1322 aa16.3■□□□□ 0.2
CPNE3-210ENST00000621245 PTF1AQ7RTS3 328 aa16.3■□□□□ 0.2
CPNE3-210ENST00000621245 NME9Q86XW9 330 aa16.3■□□□□ 0.2
CPNE3-210ENST00000621245 THRAP3Q9Y2W1 955 aaKnown RBP16.3■□□□□ 0.2
CPNE3-210ENST00000621245 RGPD2P0DJD1 1756 aa16.3■□□□□ 0.2
CPNE3-210ENST00000621245 ABCC6O95255 1503 aa16.29■□□□□ 0.2
CPNE3-210ENST00000621245 A0A1W2PP64 1363 aa16.29■□□□□ 0.2
CPNE3-210ENST00000621245 TOM1L2Q6ZVM7 507 aa16.29■□□□□ 0.2
CPNE3-210ENST00000621245 ZNF692Q9BU19 519 aaPredicted RBP16.29■□□□□ 0.2
CPNE3-210ENST00000621245 SLC12A5Q9H2X9 1139 aa16.29■□□□□ 0.2
CPNE3-210ENST00000621245 OVOS2A0A0G2JMS6 1433 aa16.28■□□□□ 0.2
CPNE3-210ENST00000621245 OVOS2A0A0J9YW53 1432 aa16.28■□□□□ 0.2
CPNE3-210ENST00000621245 OVOS2Q6IE36 1432 aa16.28■□□□□ 0.2
CPNE3-210ENST00000621245 USP31Q70CQ4 1352 aa16.27■□□□□ 0.2
CPNE3-210ENST00000621245 TMC1Q8TDI8 760 aa16.26■□□□□ 0.19
CPNE3-210ENST00000621245 TESK2Q96S53 571 aa16.26■□□□□ 0.19
CPNE3-210ENST00000621245 EDC4Q6P2E9 1401 aaKnown RBP16.26■□□□□ 0.19
CPNE3-210ENST00000621245 NHSQ6T4R5 1651 aa16.25■□□□□ 0.19
CPNE3-210ENST00000621245 MARCH10Q8NA82 808 aaPredicted RBP16.25■□□□□ 0.19
CPNE3-210ENST00000621245 KCNH5Q8NCM2 988 aa16.25■□□□□ 0.19
CPNE3-210ENST00000621245 CASZ1Q86V15 1759 aa16.25■□□□□ 0.19
CPNE3-210ENST00000621245 PARD3Q8TEW0 1356 aa16.25■□□□□ 0.19
CPNE3-210ENST00000621245 MYOM1P52179 1685 aa16.24■□□□□ 0.19
CPNE3-210ENST00000621245 DDB1Q16531 1140 aa16.24■□□□□ 0.19
CPNE3-210ENST00000621245 ZNF219Q9P2Y4 722 aaPredicted RBP16.24■□□□□ 0.19
CPNE3-210ENST00000621245 SHANK3Q9BYB0 1731 aa16.23■□□□□ 0.19
CPNE3-210ENST00000621245 TNS2Q63HR2 1409 aa16.23■□□□□ 0.19
CPNE3-210ENST00000621245 ST20-MTHFSA0A0A6YYL1 179 aa16.23■□□□□ 0.19
CPNE3-210ENST00000621245 CARD10Q9BWT7 1032 aa16.23■□□□□ 0.19
CPNE3-210ENST00000621245 UTRNP46939 3433 aa16.22■□□□□ 0.19
CPNE3-210ENST00000621245 BTAF1O14981 1849 aa16.22■□□□□ 0.19
CPNE3-210ENST00000621245 KIF20BQ96Q89 1820 aa16.22■□□□□ 0.19
CPNE3-210ENST00000621245 FAM208AQ9UK61 1670 aaKnown RBP16.22■□□□□ 0.19
CPNE3-210ENST00000621245 CSB-PGBD3P0DP91 1061 aa16.22■□□□□ 0.19
CPNE3-210ENST00000621245 TRIM26Q12899 539 aaPredicted RBP16.21■□□□□ 0.19
CPNE3-210ENST00000621245 ERBB3P21860 1342 aa16.2■□□□□ 0.18
CPNE3-210ENST00000621245 ANO8Q9HCE9 1232 aaPredicted RBP16.2■□□□□ 0.18
CPNE3-210ENST00000621245 KAT6BQ8WYB5 2073 aa16.2■□□□□ 0.18
CPNE3-210ENST00000621245 FBLN1P23142 703 aa16.19■□□□□ 0.18
CPNE3-210ENST00000621245 HDGFL2Q7Z4V5 671 aaPredicted RBP16.19■□□□□ 0.18
CPNE3-210ENST00000621245 BCL9O00512 1426 aa16.19■□□□□ 0.18
CPNE3-210ENST00000621245 CCDC7Q96M83 1385 aa16.18■□□□□ 0.18
CPNE3-210ENST00000621245 USP47Q96K76 1375 aa16.17■□□□□ 0.18
CPNE3-210ENST00000621245 PROM2Q8N271 834 aa16.17■□□□□ 0.18
CPNE3-210ENST00000621245 ANKRD24Q8TF21 1146 aa16.17■□□□□ 0.18
CPNE3-210ENST00000621245 DOT1LQ8TEK3 1739 aa16.16■□□□□ 0.18
CPNE3-210ENST00000621245 PAPPAQ13219 1627 aa16.16■□□□□ 0.18
CPNE3-210ENST00000621245 KCNQ2O43526 872 aa16.16■□□□□ 0.18
CPNE3-210ENST00000621245 BCL11BQ9C0K0 894 aaPredicted RBP16.16■□□□□ 0.18
CPNE3-210ENST00000621245 PDGFDQ9GZP0 370 aaPredicted RBP16.16■□□□□ 0.18
CPNE3-210ENST00000621245 TERF2IPQ9NYB0 399 aa16.16■□□□□ 0.18
CPNE3-210ENST00000621245 CDCA7Q9BWT1 371 aaPredicted RBP16.15■□□□□ 0.18
CPNE3-210ENST00000621245 NLRP2Q9NX02 1062 aa16.15■□□□□ 0.18
CPNE3-210ENST00000621245 TUBGCP6Q96RT7 1819 aa16.15■□□□□ 0.18
CPNE3-210ENST00000621245 PUS7Q96PZ0 661 aaKnown RBP16.14■□□□□ 0.17
CPNE3-210ENST00000621245 ANKRD36BQ8N2N9 1353 aa16.13■□□□□ 0.17
CPNE3-210ENST00000621245 NINLQ9Y2I6 1382 aa16.13■□□□□ 0.17
CPNE3-210ENST00000621245 ACSBG1Q96GR2 724 aa16.13■□□□□ 0.17
CPNE3-210ENST00000621245 GOLGB1Q14789 3259 aaKnown RBP16.12■□□□□ 0.17
CPNE3-210ENST00000621245 EXOC5O00471 708 aa16.12■□□□□ 0.17
CPNE3-210ENST00000621245 PLSCR1O15162 318 aa16.12■□□□□ 0.17
CPNE3-210ENST00000621245 LTV1Q96GA3 475 aaPredicted RBP16.12■□□□□ 0.17
CPNE3-210ENST00000621245 MAP3K19Q56UN5 1328 aa16.12■□□□□ 0.17
CPNE3-210ENST00000621245 C11orf95C9JLR9 678 aaPredicted RBP16.11■□□□□ 0.17
CPNE3-210ENST00000621245 NBPF14Q5TI25 921 aa16.11■□□□□ 0.17
CPNE3-210ENST00000621245 MEGF6O75095 1541 aa16.1■□□□□ 0.17
CPNE3-210ENST00000621245 IL2RBP14784 551 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms