RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 SLC10A4Q96EP9 437 aa11.59□□□□□ -0.55
VPS29-212ENST00000621131 ZFP42Q96MM3 310 aa11.59□□□□□ -0.55
VPS29-212ENST00000621131 KCTD15Q96SI1 283 aaPredicted RBP11.59□□□□□ -0.55
VPS29-212ENST00000621131 CDV3Q9UKY7 258 aaKnown RBP11.59□□□□□ -0.55
VPS29-212ENST00000621131 CCDC116Q8IYX3 515 aa11.58□□□□□ -0.56
VPS29-212ENST00000621131 SOCS7O14512 581 aa11.57□□□□□ -0.56
VPS29-212ENST00000621131 SNRKQ9NRH2 765 aa11.57□□□□□ -0.56
VPS29-212ENST00000621131 MTMR14Q8NCE2 650 aa11.56□□□□□ -0.56
VPS29-212ENST00000621131 EMILIN1Q9Y6C2 1016 aa11.56□□□□□ -0.56
VPS29-212ENST00000621131 SCARF1Q14162 830 aa11.54□□□□□ -0.56
VPS29-212ENST00000621131 PPP1R26Q5T8A7 1209 aaPredicted RBP11.54□□□□□ -0.56
VPS29-212ENST00000621131 LCE2AQ5TA79 106 aaPredicted RBP11.54□□□□□ -0.56
VPS29-212ENST00000621131 TREML4Q6UXN2 200 aa11.54□□□□□ -0.56
VPS29-212ENST00000621131 PURBQ96QR8 312 aaKnown RBP11.54□□□□□ -0.56
VPS29-212ENST00000621131 INTS6LQ5JSJ4 861 aaKnown RBP11.53□□□□□ -0.56
VPS29-212ENST00000621131 ZBBXA8MT70 800 aa11.52□□□□□ -0.57
VPS29-212ENST00000621131 GPR37L1O60883 481 aa11.52□□□□□ -0.57
VPS29-212ENST00000621131 DZIP3Q86Y13 1208 aaKnown RBP11.52□□□□□ -0.57
VPS29-212ENST00000621131 MEIOBQ8N635 442 aa11.52□□□□□ -0.57
VPS29-212ENST00000621131 FBXO45P0C2W1 286 aa11.51□□□□□ -0.57
VPS29-212ENST00000621131 DHX9Q08211 1270 aaKnown RBP11.5□□□□□ -0.57
VPS29-212ENST00000621131 NFX1Q12986 1120 aaKnown RBP11.5□□□□□ -0.57
VPS29-212ENST00000621131 PGPEP1Q9NXJ5 209 aa11.5□□□□□ -0.57
VPS29-212ENST00000621131 ESPNB1AK53 854 aa11.49□□□□□ -0.57
VPS29-212ENST00000621131 NBPF20Q3BBV1 942 aa11.49□□□□□ -0.57
VPS29-212ENST00000621131 Q6ZVU0 165 aa11.49□□□□□ -0.57
VPS29-212ENST00000621131 CBLBQ13191 982 aa11.48□□□□□ -0.57
VPS29-212ENST00000621131 C6orf118Q5T5N4 469 aa11.48□□□□□ -0.57
VPS29-212ENST00000621131 LINC00528Q8N1L1 170 aa11.48□□□□□ -0.57
VPS29-212ENST00000621131 NDUFB9Q9Y6M9 179 aa11.48□□□□□ -0.57
VPS29-212ENST00000621131 TERTO14746 1132 aaKnown RBP11.47□□□□□ -0.57
VPS29-212ENST00000621131 WFS1O76024 890 aa11.46□□□□□ -0.57
VPS29-212ENST00000621131 TSEN34Q9BSV6 310 aaKnown RBP11.46□□□□□ -0.57
VPS29-212ENST00000621131 TMPRSS4Q9NRS4 437 aa11.46□□□□□ -0.57
VPS29-212ENST00000621131 ERVH48-1M5A8F1 160 aa11.45□□□□□ -0.58
VPS29-212ENST00000621131 UPP2O95045 317 aa11.45□□□□□ -0.58
VPS29-212ENST00000621131 BMP2P12643 396 aa11.45□□□□□ -0.58
VPS29-212ENST00000621131 NR1H3Q13133 447 aa11.45□□□□□ -0.58
VPS29-212ENST00000621131 SOBPA7XYQ1 873 aa11.44□□□□□ -0.58
VPS29-212ENST00000621131 APBB1O00213 710 aa11.44□□□□□ -0.58
VPS29-212ENST00000621131 NXF1Q9UBU9 619 aaKnown RBP11.44□□□□□ -0.58
VPS29-212ENST00000621131 PCDHB9Q9Y5E1 797 aa11.44□□□□□ -0.58
VPS29-212ENST00000621131 GIGYF1O75420 1035 aaPredicted RBP11.43□□□□□ -0.58
VPS29-212ENST00000621131 RAB15P59190 212 aa11.43□□□□□ -0.58
VPS29-212ENST00000621131 LCE2CQ5TA81 110 aa11.43□□□□□ -0.58
VPS29-212ENST00000621131 SEPT12Q8IYM1 358 aa11.43□□□□□ -0.58
VPS29-212ENST00000621131 SOS2Q07890 1332 aaPredicted RBP11.42□□□□□ -0.58
VPS29-212ENST00000621131 LILRA1O75019 489 aa11.41□□□□□ -0.58
VPS29-212ENST00000621131 ADD1P35611 737 aaKnown RBP11.41□□□□□ -0.58
VPS29-212ENST00000621131 MCCD1P59942 119 aaPredicted RBP11.41□□□□□ -0.58
VPS29-212ENST00000621131 ZNF784Q8NCA9 323 aaPredicted RBP11.41□□□□□ -0.58
VPS29-212ENST00000621131 TBC1D2BQ9UPU7 963 aa11.4□□□□□ -0.58
VPS29-212ENST00000621131 SPINT1O43278 529 aa11.39□□□□□ -0.59
VPS29-212ENST00000621131 NPAS3Q8IXF0 933 aa11.39□□□□□ -0.59
VPS29-212ENST00000621131 AGBL1Q96MI9 1066 aa11.39□□□□□ -0.59
VPS29-212ENST00000621131 MAN1A2O60476 641 aa11.37□□□□□ -0.59
VPS29-212ENST00000621131 KDF1Q8NAX2 398 aaPredicted RBP11.37□□□□□ -0.59
VPS29-212ENST00000621131 DNMT3LQ9UJW3 386 aa11.37□□□□□ -0.59
VPS29-212ENST00000621131 ZNF330Q9Y3S2 320 aaPredicted RBP11.37□□□□□ -0.59
VPS29-212ENST00000621131 VEGFBP49765 207 aa11.36□□□□□ -0.59
VPS29-212ENST00000621131 IRF5Q13568 498 aa11.36□□□□□ -0.59
VPS29-212ENST00000621131 TTLL8A6PVC2 850 aa11.35□□□□□ -0.59
VPS29-212ENST00000621131 RELBQ01201 579 aa11.35□□□□□ -0.59
VPS29-212ENST00000621131 CCDC125Q86Z20 511 aa11.35□□□□□ -0.59
VPS29-212ENST00000621131 SLC16A10Q8TF71 515 aa11.35□□□□□ -0.59
VPS29-212ENST00000621131 PRM3Q9NNZ6 103 aa11.35□□□□□ -0.59
VPS29-212ENST00000621131 H3BM21 787 aa11.34□□□□□ -0.59
VPS29-212ENST00000621131 ADH1AP07327 375 aa11.34□□□□□ -0.59
VPS29-212ENST00000621131 RNF20Q5VTR2 975 aa11.34□□□□□ -0.59
VPS29-212ENST00000621131 ZNF592Q92610 1267 aa11.34□□□□□ -0.59
VPS29-212ENST00000621131 WIPF1O43516 503 aa11.33□□□□□ -0.6
VPS29-212ENST00000621131 ZNF395Q9H8N7 513 aaPredicted RBP11.33□□□□□ -0.6
VPS29-212ENST00000621131 CYLDQ9NQC7 956 aa11.33□□□□□ -0.6
VPS29-212ENST00000621131 FIGNL2A6NMB9 653 aa11.32□□□□□ -0.6
VPS29-212ENST00000621131 PTGIRP43119 386 aa11.32□□□□□ -0.6
VPS29-212ENST00000621131 MCM6Q14566 821 aa11.32□□□□□ -0.6
VPS29-212ENST00000621131 GDPD2Q9HCC8 539 aa11.32□□□□□ -0.6
VPS29-212ENST00000621131 CEP126Q9P2H0 1117 aa11.32□□□□□ -0.6
VPS29-212ENST00000621131 CTSOP43234 321 aaPredicted RBP11.31□□□□□ -0.6
VPS29-212ENST00000621131 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.31□□□□□ -0.6
VPS29-212ENST00000621131 INSM2Q96T92 566 aaPredicted RBP11.31□□□□□ -0.6
VPS29-212ENST00000621131 ERVK-9P63128 1117 aa11.3□□□□□ -0.6
VPS29-212ENST00000621131 TRIM52Q96A61 297 aa11.3□□□□□ -0.6
VPS29-212ENST00000621131 IRF7Q92985 503 aa11.29□□□□□ -0.6
VPS29-212ENST00000621131 PPFIA3O75145 1194 aa11.28□□□□□ -0.6
VPS29-212ENST00000621131 ERBB4Q15303 1308 aa11.28□□□□□ -0.6
VPS29-212ENST00000621131 ABL2P42684 1182 aa11.27□□□□□ -0.61
VPS29-212ENST00000621131 CC2D2BQ6DHV5 1058 aa11.27□□□□□ -0.61
VPS29-212ENST00000621131 GMPRP36959 345 aa11.26□□□□□ -0.61
VPS29-212ENST00000621131 SCTRP47872 440 aa11.26□□□□□ -0.61
VPS29-212ENST00000621131 EIF4G2P78344 907 aaKnown RBP eCLIP11.26□□□□□ -0.61
VPS29-212ENST00000621131 PTSQ03393 145 aa11.26□□□□□ -0.61
VPS29-212ENST00000621131 VAC14Q08AM6 782 aa11.26□□□□□ -0.61
VPS29-212ENST00000621131 PHTF2Q8N3S3 785 aa11.26□□□□□ -0.61
VPS29-212ENST00000621131 POLMQ9NP87 494 aaPredicted RBP11.26□□□□□ -0.61
VPS29-212ENST00000621131 PCDHB11Q9Y5F2 797 aa11.26□□□□□ -0.61
VPS29-212ENST00000621131 ATP5J2-PTCD1G3V325 749 aa11.25□□□□□ -0.61
VPS29-212ENST00000621131 RNF217Q8TC41 542 aa11.25□□□□□ -0.61
VPS29-212ENST00000621131 VSIG8P0DPA2 414 aa11.24□□□□□ -0.61
VPS29-212ENST00000621131 FOXD4L5Q5VV16 416 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms