RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 PARP4Q9UKK3 1724 aaKnown RBP12.3□□□□□ -0.44
GPC6-202ENST00000617456 PROM2Q8N271 834 aa12.29□□□□□ -0.44
GPC6-202ENST00000617456 MARCH10Q8NA82 808 aaPredicted RBP12.29□□□□□ -0.44
GPC6-202ENST00000617456 CABP1Q9NZU7 370 aa12.29□□□□□ -0.44
GPC6-202ENST00000617456 CENPJQ9HC77 1338 aaPredicted RBP12.29□□□□□ -0.44
GPC6-202ENST00000617456 AATKQ6ZMQ8 1374 aa12.29□□□□□ -0.44
GPC6-202ENST00000617456 SOX12O15370 315 aa12.28□□□□□ -0.44
GPC6-202ENST00000617456 CSB-PGBD3P0DP91 1061 aa12.28□□□□□ -0.44
GPC6-202ENST00000617456 STK32BQ9NY57 414 aa12.28□□□□□ -0.44
GPC6-202ENST00000617456 AXIN2Q9Y2T1 843 aa12.28□□□□□ -0.44
GPC6-202ENST00000617456 PEAK1Q9H792 1746 aa12.28□□□□□ -0.44
GPC6-202ENST00000617456 LRRC37A3O60309 1634 aa12.27□□□□□ -0.44
GPC6-202ENST00000617456 USP6P35125 1406 aa12.27□□□□□ -0.45
GPC6-202ENST00000617456 PTGER2P43116 358 aa12.26□□□□□ -0.45
GPC6-202ENST00000617456 TXNRD1Q16881 649 aa12.26□□□□□ -0.45
GPC6-202ENST00000617456 PIAS4Q8N2W9 510 aaPredicted RBP12.26□□□□□ -0.45
GPC6-202ENST00000617456 ZNF784Q8NCA9 323 aaPredicted RBP12.26□□□□□ -0.45
GPC6-202ENST00000617456 WDR17Q8IZU2 1322 aa12.26□□□□□ -0.45
GPC6-202ENST00000617456 BRD4O60885 1362 aaPredicted RBP12.26□□□□□ -0.45
GPC6-202ENST00000617456 CASZ1Q86V15 1759 aa12.25□□□□□ -0.45
GPC6-202ENST00000617456 SBF2Q86WG5 1849 aa12.25□□□□□ -0.45
GPC6-202ENST00000617456 SLIT3O75094 1523 aa12.24□□□□□ -0.45
GPC6-202ENST00000617456 SLC15A2Q16348 729 aa12.24□□□□□ -0.45
GPC6-202ENST00000617456 CDCA7Q9BWT1 371 aaPredicted RBP12.24□□□□□ -0.45
GPC6-202ENST00000617456 FHDC1Q9C0D6 1143 aaPredicted RBP12.24□□□□□ -0.45
GPC6-202ENST00000617456 RGPD3A6NKT7 1758 aaPredicted RBP12.23□□□□□ -0.45
GPC6-202ENST00000617456 RGPD4Q7Z3J3 1758 aa12.23□□□□□ -0.45
GPC6-202ENST00000617456 MYOM1P52179 1685 aa12.23□□□□□ -0.45
GPC6-202ENST00000617456 CPSF1Q10570 1443 aaKnown RBP12.23□□□□□ -0.45
GPC6-202ENST00000617456 EXOC5O00471 708 aa12.23□□□□□ -0.45
GPC6-202ENST00000617456 ARHGEF25Q86VW2 580 aa12.23□□□□□ -0.45
GPC6-202ENST00000617456 SYT17Q9BSW7 474 aa12.23□□□□□ -0.45
GPC6-202ENST00000617456 CARD10Q9BWT7 1032 aa12.23□□□□□ -0.45
GPC6-202ENST00000617456 KCNH5Q8NCM2 988 aa12.22□□□□□ -0.45
GPC6-202ENST00000617456 ACSBG1Q96GR2 724 aa12.22□□□□□ -0.45
GPC6-202ENST00000617456 MTFR1LQ9H019 292 aa12.22□□□□□ -0.45
GPC6-202ENST00000617456 KIAA1210Q9ULL0 1709 aa12.22□□□□□ -0.45
GPC6-202ENST00000617456 COL18A1P39060 1754 aa12.21□□□□□ -0.45
GPC6-202ENST00000617456 TTC21BQ7Z4L5 1316 aa12.21□□□□□ -0.45
GPC6-202ENST00000617456 SENP3-EIF4A1A0A087X0R7 540 aa12.21□□□□□ -0.45
GPC6-202ENST00000617456 BCL9O00512 1426 aa12.2□□□□□ -0.46
GPC6-202ENST00000617456 PIK3C2AO00443 1686 aa12.2□□□□□ -0.46
GPC6-202ENST00000617456 EVC2Q86UK5 1308 aa12.2□□□□□ -0.46
GPC6-202ENST00000617456 AKAP12Q02952 1782 aa12.2□□□□□ -0.46
GPC6-202ENST00000617456 QRICH2Q9H0J4 1663 aa12.19□□□□□ -0.46
GPC6-202ENST00000617456 UTRNP46939 3433 aa12.19□□□□□ -0.46
GPC6-202ENST00000617456 WNK3Q9BYP7 1800 aa12.19□□□□□ -0.46
GPC6-202ENST00000617456 ARXQ96QS3 562 aa12.19□□□□□ -0.46
GPC6-202ENST00000617456 KLHL34Q8N239 644 aa12.18□□□□□ -0.46
GPC6-202ENST00000617456 SGIP1Q9BQI5 828 aa12.18□□□□□ -0.46
GPC6-202ENST00000617456 ZNF692Q9BU19 519 aaPredicted RBP12.18□□□□□ -0.46
GPC6-202ENST00000617456 NLRP2Q9NX02 1062 aa12.18□□□□□ -0.46
GPC6-202ENST00000617456 RGPD5Q99666 1765 aa12.18□□□□□ -0.46
GPC6-202ENST00000617456 CCDC7Q96M83 1385 aa12.18□□□□□ -0.46
GPC6-202ENST00000617456 TNS2Q63HR2 1409 aa12.17□□□□□ -0.46
GPC6-202ENST00000617456 KAT6BQ8WYB5 2073 aa12.17□□□□□ -0.46
GPC6-202ENST00000617456 TTC21AQ8NDW8 1320 aa12.16□□□□□ -0.46
GPC6-202ENST00000617456 C1QTNF8P60827 252 aa12.16□□□□□ -0.46
GPC6-202ENST00000617456 GPR162Q16538 588 aa12.16□□□□□ -0.46
GPC6-202ENST00000617456 ZNF827Q17R98 1081 aa12.16□□□□□ -0.46
GPC6-202ENST00000617456 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.16□□□□□ -0.46
GPC6-202ENST00000617456 L3MBTL2Q969R5 705 aa12.15□□□□□ -0.46
GPC6-202ENST00000617456 KTN1Q86UP2 1357 aaKnown RBP12.15□□□□□ -0.46
GPC6-202ENST00000617456 NPM3O75607 178 aaKnown RBP12.14□□□□□ -0.47
GPC6-202ENST00000617456 IL2RBP14784 551 aa12.14□□□□□ -0.47
GPC6-202ENST00000617456 NFAT5O94916 1531 aa12.14□□□□□ -0.47
GPC6-202ENST00000617456 LRRC4BQ9NT99 713 aa12.13□□□□□ -0.47
GPC6-202ENST00000617456 CHD4Q14839 1912 aa12.13□□□□□ -0.47
GPC6-202ENST00000617456 ERBB3P21860 1342 aa12.12□□□□□ -0.47
GPC6-202ENST00000617456 TRPM1Q7Z4N2 1603 aa12.12□□□□□ -0.47
GPC6-202ENST00000617456 EIF5BO60841 1220 aaKnown RBP12.12□□□□□ -0.47
GPC6-202ENST00000617456 NME9Q86XW9 330 aa12.12□□□□□ -0.47
GPC6-202ENST00000617456 ANKRD24Q8TF21 1146 aa12.12□□□□□ -0.47
GPC6-202ENST00000617456 ROCK2O75116 1388 aaKnown RBP12.12□□□□□ -0.47
GPC6-202ENST00000617456 NHSQ6T4R5 1651 aa12.12□□□□□ -0.47
GPC6-202ENST00000617456 ABCC6O95255 1503 aa12.11□□□□□ -0.47
GPC6-202ENST00000617456 GIGYF1O75420 1035 aaPredicted RBP12.11□□□□□ -0.47
GPC6-202ENST00000617456 POLD1P28340 1107 aa12.11□□□□□ -0.47
GPC6-202ENST00000617456 DDX54Q8TDD1 881 aaKnown RBP12.11□□□□□ -0.47
GPC6-202ENST00000617456 MAP3K5Q99683 1374 aa12.1□□□□□ -0.47
GPC6-202ENST00000617456 KCNQ4P56696 695 aa12.1□□□□□ -0.47
GPC6-202ENST00000617456 TMC1Q8TDI8 760 aa12.1□□□□□ -0.47
GPC6-202ENST00000617456 AKT1S1Q96B36 256 aa12.1□□□□□ -0.47
GPC6-202ENST00000617456 LTV1Q96GA3 475 aaPredicted RBP12.1□□□□□ -0.47
GPC6-202ENST00000617456 PAPPAQ13219 1627 aa12.1□□□□□ -0.47
GPC6-202ENST00000617456 BTAF1O14981 1849 aa12.09□□□□□ -0.47
GPC6-202ENST00000617456 NEUROD1Q13562 356 aa12.09□□□□□ -0.47
GPC6-202ENST00000617456 SYTL4Q96C24 671 aaPredicted RBP12.09□□□□□ -0.47
GPC6-202ENST00000617456 SIN3AQ96ST3 1273 aa12.09□□□□□ -0.47
GPC6-202ENST00000617456 TFCP2L1Q9NZI6 479 aa12.09□□□□□ -0.47
GPC6-202ENST00000617456 USP31Q70CQ4 1352 aa12.08□□□□□ -0.48
GPC6-202ENST00000617456 SLC27A3Q5K4L6 730 aa12.08□□□□□ -0.48
GPC6-202ENST00000617456 NLGN2Q8NFZ4 835 aa12.08□□□□□ -0.48
GPC6-202ENST00000617456 PNPLA7Q6ZV29 1317 aa12.08□□□□□ -0.48
GPC6-202ENST00000617456 SBNO2Q9Y2G9 1366 aa12.07□□□□□ -0.48
GPC6-202ENST00000617456 MSH5O43196 834 aa12.07□□□□□ -0.48
GPC6-202ENST00000617456 HDGFL2Q7Z4V5 671 aaPredicted RBP12.07□□□□□ -0.48
GPC6-202ENST00000617456 SLC16A10Q8TF71 515 aa12.07□□□□□ -0.48
GPC6-202ENST00000617456 PRIM1P49642 420 aaKnown RBP12.06□□□□□ -0.48
GPC6-202ENST00000617456 TRIM26Q12899 539 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 174.8 ms